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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 344total RNA-seq
  • 152ATAC-seq
  • 84ChIP-seq
  • 49WGBS
  • 15single cell RNA-seq
  • 11snATAC-seq
  • 10MeRIP-seq
  • 9Hi-C
  • 7DNase-seq
  • 2Capture-C
  • 2RRBS
  • 2small RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1pCHi-C
Assay category
  • 361Transcription
  • 170DNA accessibility
  • 84DNA binding
  • 51DNA methylation
  • 93D chromatin structure
Target of assay
  • 51histone
  • 51histone modification
  • 28control
  • 26broad histone mark
  • 25narrow histone mark
  • 10transcription factor
  • 5RNA binding protein
  • 5nucleotide modification
Date released
  • 124July, 2018
  • 112August, 2017
  • 104May, 2022
  • 61May, 2021
  • 55November, 2019
  • 40September, 2018
  • 32February, 2021
  • 31October, 2018
  • 19February, 2023
  • 18October, 2019
  • 14March, 2020
  • 10April, 2018
  • 10November, 2020
  • 8January, 2021
  • 7August, 2020
  • 6July, 2019
  • 5March, 2019
  • 5October, 2017
  • 5September, 2017
  • 4August, 2021
  • 4June, 2019
  • 4November, 2018
  • 3October, 2022
  • 3September, 2020
  • 2May, 2019
  • 1August, 2018
  • 1August, 2022
  • 1February, 2020
Available data
  • 485bam
  • 444bigWig
  • 352tsv
  • 214fastq
  • 123bed narrowPeak
  • 80zippedFastqFolder
  • 58bigBed narrowPeak
  • 15bed broadPeak
  • 12tagAlign
  • 8bed bed3+
  • 7bedpe bed3+
  • 7bigBed broadPeak
  • 7hic
  • 6txt
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 3cool
  • 1bedpe
  • 1hdf5
Organism
  • 688Homo sapiens
Biosample type
  • 430tissue
  • 164primary cell
  • 92cell line
  • 3in vitro differentiated cells
Organ
  • 689pancreas
  • 610connective tissue
  • 473adipose tissue
  • 405liver
  • 393heart
  • 354kidney
  • 343epithelium
  • 266brain
  • 230vasculature
  • 227blood vessel
  • 159bone element
  • 141artery
  • 122limb
  • 94musculature of body
  • 61eye
  • 54blood
  • 54bodily fluid
  • 43nerve
  • 22vein
  • 20lung
  • 18spleen
  • 18ureter
  • 16skeleton
  • 10embryo
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 556AMP
  • 99HPAP
  • 34T1D
Genome assembly (visualization)
  • 479hg19
  • 456GRCh38
Lab
  • 521AMP-T2D consortium
  • 99Klaus Kaestner, Upenn
  • 51Kyle Gaulton, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 4Bing Ren, UCSD
  • 2Mark McCarthy, Oxford
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 76inconsistent ontology term
  • 4audit script error
Audit category:
  • 1inconsistent assembly
files.run_type!
  • single-ended
BIOSAMPLE
ASSAY

689 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
WGBS
single cell RNA-seq
snATAC-seq
MeRIP-seq
Hi-C
DNase-seq
Capture-C
RRBS
small RNA-seq
CRISPR genome editing followed by sgRNA sequencing
pCHi-C
tissue
islet of Langerhans27858227431
body of pancreas3415242
endocrine pancreas16
pancreas241211
primary cell
pancreatic alpha cell10353121
pancreatic beta cell10231621
pancreatic acinar cell4951
pancreatic ductal cell443
pancreatic delta cell2
cell line
EndoC_BH13319156121
Panc11311
in vitro differentiated cells
pancreatic PP cell3
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