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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 344total RNA-seq
  • 152ATAC-seq
  • 84ChIP-seq
  • 49WGBS
  • 15single cell RNA-seq
  • 11snATAC-seq
  • 10MeRIP-seq
  • 9Hi-C
  • 7DNase-seq
  • 2Capture-C
  • 2RRBS
  • 2small RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1pCHi-C
Assay category
  • 361Transcription
  • 170DNA accessibility
  • 84DNA binding
  • 51DNA methylation
  • 93D chromatin structure
Target of assay
  • 51histone
  • 51histone modification
  • 28control
  • 26broad histone mark
  • 25narrow histone mark
  • 10transcription factor
  • 5RNA binding protein
  • 5nucleotide modification
Date released
  • 124July, 2018
  • 112August, 2017
  • 104May, 2022
  • 61May, 2021
  • 55November, 2019
  • 40September, 2018
  • 32February, 2021
  • 31October, 2018
  • 19February, 2023
  • 18October, 2019
  • 14March, 2020
  • 10April, 2018
  • 10November, 2020
  • 8January, 2021
  • 7August, 2020
  • 6July, 2019
  • 5March, 2019
  • 5October, 2017
  • 5September, 2017
  • 4August, 2021
  • 4June, 2019
  • 4November, 2018
  • 3October, 2022
  • 3September, 2020
  • 2May, 2019
  • 1August, 2018
  • 1August, 2022
  • 1February, 2020
Available data
  • 485bam
  • 444bigWig
  • 352tsv
  • 214fastq
  • 123bed narrowPeak
  • 80zippedFastqFolder
  • 58bigBed narrowPeak
  • 15bed broadPeak
  • 12tagAlign
  • 8bed bed3+
  • 7bedpe bed3+
  • 7bigBed broadPeak
  • 7hic
  • 6txt
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 3cool
  • 1bedpe
  • 1hdf5
Organism
  • 688Homo sapiens
Biosample type
  • 430tissue
  • 164primary cell
  • 92cell line
  • 3in vitro differentiated cells
Organ
  • 689pancreas
  • 610connective tissue
  • 473adipose tissue
  • 405liver
  • 393heart
  • 354kidney
  • 343epithelium
  • 266brain
  • 230vasculature
  • 227blood vessel
  • 159bone element
  • 141artery
  • 122limb
  • 95musculature of body
  • 61eye
  • 54blood
  • 54bodily fluid
  • 43nerve
  • 22vein
  • 20lung
  • 18spleen
  • 18ureter
  • 16skeleton
  • 10embryo
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 556AMP
  • 99HPAP
  • 34T1D
Genome assembly (visualization)
  • 479hg19
  • 456GRCh38
Lab
  • 521AMP-T2D consortium
  • 99Klaus Kaestner, Upenn
  • 51Kyle Gaulton, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 4Bing Ren, UCSD
  • 2Mark McCarthy, Oxford
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 76inconsistent ontology term
  • 4audit script error
Audit category:
  • 1inconsistent assembly
files.run_type!
  • single-ended
BIOSAMPLE
ASSAY

689 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
WGBS
single cell RNA-seq
snATAC-seq
MeRIP-seq
Hi-C
DNase-seq
Capture-C
RRBS
small RNA-seq
CRISPR genome editing followed by sgRNA sequencing
pCHi-C
tissue
islet of Langerhans27858227431
body of pancreas3415242
endocrine pancreas16
pancreas241211
primary cell
pancreatic alpha cell10353121
pancreatic beta cell10231621
pancreatic acinar cell4951
pancreatic ductal cell443
pancreatic delta cell2
pancreatic stellate cell1
cell line
EndoC_BH13319156121
Panc11311
in vitro differentiated cells
pancreatic PP cell3
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