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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1352total RNA-seq
  • 264single cell RNA-seq
  • 87RNA microarray
  • 18small RNA-seq
  • 10MeRIP-seq
  • 5STARR-seq
  • 3snDrop-seq
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1snATAC-seq
Assay category
  • 1638Transcription
  • 1DNA accessibility
Target of assay
  • 5control
  • 5nucleotide modification
Date released
  • 649February, 2021
  • 186August, 2021
  • 182May, 2021
  • 145May, 2020
  • 126July, 2018
  • 89August, 2017
  • 60May, 2022
  • 49July, 2019
  • 47September, 2023
  • 27September, 2018
  • 26October, 2019
  • 25February, 2020
  • 21September, 2020
  • 20November, 2019
  • 19February, 2023
  • 15March, 2020
  • 14November, 2020
  • 12April, 2018
  • 10April, 2020
  • 10December, 2019
  • 4March, 2023
  • 4May, 2023
  • 2October, 2018
  • 1August, 2018
  • 1June, 2018
  • 1November, 2018
  • 1October, 2022
Available data
  • 1380tsv
  • 1237bam
  • 1233bigWig
  • 175fastq
  • 157txt
  • 33zippedFastqFolder
  • 8csv
  • 2bed bed3+
Organism
  • 1738Homo sapiens
Biosample type
  • 1312tissue
  • 186primary cell
  • 123cell line
  • 123in vitro differentiated cells
  • 2stem cell
Organ
  • 473connective tissue
  • 401adipose tissue
  • 372pancreas
  • 190liver
  • 162heart
  • 146bone element
  • 128kidney
  • 95epithelium
  • 65blood vessel
  • 65vasculature
  • 56artery
  • 21brain
  • 19eye
  • 10embryo
  • 10lung
  • 8musculature of body
  • 4skeleton
  • 3limb
  • 1nerve
  • 1spinal cord
Project
  • 1559AMP
  • 66HPAP
  • 60T1D
  • 47KPMP
  • 10LungMap
  • 4community
Genome assembly (visualization)
  • 1234hg19
  • 1232GRCh38
Lab
  • 1444AMP-T2D consortium
  • 70Kyle Gaulton, UCSD
  • 66Klaus Kaestner, Upenn
  • 60Katalin Susztak, Upenn
  • 47KPMP
  • 20Karen Mohlke, UNC
  • 15Bing Ren, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 10Xin Sun, UCSD
  • 4Anna Gloyn, Oxford
Audit category:
  • 219inconsistent ontology term
  • 9audit script error
files.run_type!
  • single-ended
replicates.library.nucleic_acid_term_name!
  • DNA
BIOSAMPLE
ASSAY

1746 results

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Clear Filters
total RNA-seq
single cell RNA-seq
RNA microarray
small RNA-seq
MeRIP-seq
STARR-seq
snDrop-seq
CRISPR RNA-seq
CRISPR genome editing followed by sgRNA sequencing
CRISPRi RNA-seq
MPRA
shRNA RNA-seq
siRNA RNA-seq
snATAC-seq
tissue
adipose tissue382
islet of Langerhans2924
liver16711
kidney4964
bone element84
primary cell
Langerhans cell66
monocyte52
pancreatic alpha cell102
pancreatic beta cell102
pancreatic acinar cell45
cell line
smooth muscle cell of the coronary artery52
EndoC_BH13361
HepG292
H1-hESC8
EndoC-BH111
in vitro differentiated cells
cardiomyocytes59
cardiac precursors (cardiac muscle cell)19
induced pluripotent stem cell9
neural progenitor cell7
adipocyte5
stem cell
SB Ad3.111
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