Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1175ChIP-seq
  • 530ATAC-seq
  • 209DNase-seq
  • 83snATAC-seq
  • 69WGBS
  • 68total RNA-seq
  • 57pCHi-C
  • 34Hi-C
  • 17RRBS
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3FAIRE-seq
  • 3single cell RNA-seq
  • 2HiChIP
  • 1DNAme array
  • 1whole genome sequencing assay
Assay category
  • 1175DNA binding
  • 825DNA accessibility
  • 87DNA methylation
  • 71Transcription
  • 343D chromatin structure
  • 1DNA sequencing
Target of assay
  • 795histone modification
  • 794histone
  • 408narrow histone mark
  • 386broad histone mark
  • 211control
  • 169transcription factor
  • 46RNA binding protein
  • 11chromatin remodeller
  • 7recombinant protein
  • 3other context
  • 3other post-translational modification
Date released
  • 288October, 2019
  • 218June, 2019
  • 217May, 2021
  • 196May, 2020
  • 143August, 2017
  • 140May, 2022
  • 133August, 2021
  • 125November, 2017
  • 120May, 2019
  • 110February, 2023
  • 80April, 2019
  • 66February, 2021
  • 59July, 2019
  • 51October, 2018
  • 49March, 2020
  • 41November, 2019
  • 40May, 2024
  • 39November, 2018
  • 33December, 2018
  • 16January, 2021
  • 14September, 2018
  • 13January, 2019
  • 13October, 2017
  • 11May, 2023
  • 9April, 2020
  • 7August, 2020
  • 5March, 2019
  • 5September, 2017
  • 4December, 2017
  • 3January, 2018
  • 3October, 2022
  • 3September, 2020
  • 2November, 2020
  • 1August, 2018
  • 1August, 2022
  • 1March, 2023
Available data
  • 1353bam
  • 1294bed narrowPeak
  • 1244bigWig
  • 660bigBed narrowPeak
  • 359tagAlign
  • 275fastq
  • 234bed broadPeak
  • 220bed bed3+
  • 206bigBed broadPeak
  • 122tsv
  • 101zippedFastqFolder
  • 64xls
  • 28bed bedMethyl
  • 28bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4txt
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1tar
  • 1vcf
Organism
  • 2259Homo sapiens
Biosample type
  • 1290tissue
  • 618primary cell
  • 215cell line
  • 132in vitro differentiated cells
  • 4stem cell
Organ
  • 317pancreas
  • 248epithelium
  • 245brain
  • 231heart
  • 226kidney
  • 215liver
  • 165vasculature
  • 162blood vessel
  • 137connective tissue
  • 119limb
  • 86musculature of body
  • 85artery
  • 72adipose tissue
  • 54blood
  • 54bodily fluid
  • 42eye
  • 42nerve
  • 22vein
  • 18spleen
  • 18ureter
  • 13bone element
  • 12skeleton
  • 10lung
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1stomach
  • 1urinary bladder
Project
  • 1918AMP
  • 184T1D
  • 147HPAP
  • 9LungMap
  • 1ITG
Genome assembly (visualization)
  • 1288hg19
  • 1256GRCh38
Lab
  • 1653AMP-T2D consortium
  • 273Kyle Gaulton, UCSD
  • 147Klaus Kaestner, Upenn
  • 82Katalin Susztak, Upenn
  • 40Patrick T. Ellinor, Broad
  • 23Bing Ren, UCSD
  • 20Karen Mohlke, UNC
  • 9Xin Sun, UCSD
  • 7Struan F.A. Grant, CHOP
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 123inconsistent ontology term
  • 33audit script error
  • 1inconsistent replicate
Audit category:
  • 6missing controlled_by
Audit category:
  • 8inconsistent control run_type
  • 7inconsistent control read length
  • 1inconsistent assembly
files.run_type!
  • single-ended
BIOSAMPLE
ASSAY

2259 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
snATAC-seq
WGBS
total RNA-seq
pCHi-C
Hi-C
RRBS
Capture-C
CRISPR genome editing followed by DNA sequencing
FAIRE-seq
single cell RNA-seq
HiChIP
DNAme array
whole genome sequencing assay
tissue
islet of Langerhans43687431
kidney2775136111
liver91202211
heart left ventricle35234111
coronary artery5362
primary cell
monocyte8515211
pancreatic alpha cell35311
Langerhans cell48
pancreatic beta cell23161
CD8-positive, alpha-beta T cell33221
cell line
HepG269115221
GM12878451
EndoC_BH115191232
Panc11311
smooth muscle cell of the coronary artery68
in vitro differentiated cells
embryonic stem cell3761
neural progenitor cell2110
adipocyte14811
Pancreatic progenitors (progenitor cell of endocrine pancreas)5
cardiomyocytes (cardiac muscle cell)122
stem cell
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego