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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 332ChIP-seq
  • 240total RNA-seq
  • 195ATAC-seq
  • 49pCHi-C
  • 47DNase-seq
  • 27single cell RNA-seq
  • 19Hi-C
  • 15RRBS
  • 12snATAC-seq
  • 11small RNA-seq
  • 10MeRIP-seq
  • 8WGBS
  • 4STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 3FAIRE-seq
  • 2Capture-C
  • 2snDrop-seq
  • 1DNAme array
Assay category
  • 332DNA binding
  • 278Transcription
  • 257DNA accessibility
  • 24DNA methylation
  • 193D chromatin structure
Target of assay
  • 187histone
  • 187histone modification
  • 115narrow histone mark
  • 114transcription factor
  • 72broad histone mark
  • 36control
  • 21RNA binding protein
  • 11chromatin remodeller
  • 7recombinant protein
  • 5nucleotide modification
Date released
  • 148May, 2021
  • 144May, 2020
  • 124October, 2019
  • 66August, 2021
  • 62June, 2019
  • 60July, 2019
  • 53February, 2023
  • 48March, 2020
  • 43February, 2021
  • 43November, 2017
  • 26December, 2018
  • 25February, 2020
  • 24November, 2019
  • 22November, 2018
  • 14May, 2019
  • 13January, 2019
  • 10April, 2018
  • 10November, 2020
  • 8July, 2018
  • 7December, 2019
  • 7October, 2017
  • 5January, 2021
  • 5March, 2019
  • 3October, 2022
  • 2April, 2019
  • 2August, 2017
  • 2May, 2022
  • 1August, 2018
  • 1June, 2018
  • 1March, 2023
  • 1September, 2018
Available data
  • 665bam
  • 618bigWig
  • 366bed narrowPeak
  • 302tsv
  • 194bigBed narrowPeak
  • 131fastq
  • 118tagAlign
  • 58bed bed3+
  • 47bed broadPeak
  • 45bigBed broadPeak
  • 16bed bedMethyl
  • 16bigBed bedMethyl
  • 13bedpe bed3+
  • 12hic
  • 8txt
  • 7bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 3cool
  • 2csv
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1tar
Organism
  • 980Homo sapiens
Biosample type
  • 390primary cell
  • 271tissue
  • 170cell line
  • 148in vitro differentiated cells
  • 1stem cell
Organ
  • 113pancreas
  • 101epithelium
  • 90brain
  • 89liver
  • 58kidney
  • 54connective tissue
  • 47blood
  • 47bodily fluid
  • 45vasculature
  • 42blood vessel
  • 41heart
  • 20musculature of body
  • 19vein
  • 13adipose tissue
  • 11artery
  • 10embryo
  • 9bone element
  • 8limb
  • 8skeleton
  • 7eye
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1mammary gland
  • 1nerve
  • 1ovary
  • 1pituitary gland
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1urinary bladder
Project
  • 809AMP
  • 161T1D
  • 9HPAP
  • 1ITG
Genome assembly (visualization)
  • 689hg19
  • 584GRCh38
Lab
  • 762AMP-T2D consortium
  • 173Kyle Gaulton, UCSD
  • 10Bing Ren, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 9Klaus Kaestner, Upenn
  • 7Struan F.A. Grant, CHOP
  • 4Katalin Susztak, Upenn
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 130inconsistent ontology term
  • 6audit script error
  • 1inconsistent replicate
Audit category:
  • 6missing controlled_by
Audit category:
  • 8inconsistent control run_type
  • 7inconsistent control read length
  • 1inconsistent assembly
files.run_type!
  • single-ended
replication_type!
  • unreplicated
BIOSAMPLE
ASSAY

980 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
DNase-seq
single cell RNA-seq
Hi-C
RRBS
snATAC-seq
small RNA-seq
MeRIP-seq
WGBS
STARR-seq
CRISPR genome editing followed by DNA sequencing
FAIRE-seq
Capture-C
snDrop-seq
DNAme array
primary cell
monocyte4726211
naive thymus-derived CD4-positive, alpha-beta T cell21221
CD4-positive, alpha-beta memory T cell22
endothelial cell of umbilical vein16111
macrophage111
tissue
islet of Langerhans210372134
brain111121
heart534111
liver53111
kidney12141
cell line
HepG253512112
GM1287845
EndoC_BH122263
Panc11111
H1-hESC8
in vitro differentiated cells
neural progenitor cell21710
embryonic stem cell11551
cardiac precursors (cardiac muscle cell)1911
cardiomyocytes12
adipocyte1811
stem cell
mesenchymal stem cell1
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