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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 189ChIP-seq
  • 90ATAC-seq
  • 51total RNA-seq
  • 21DNase-seq
  • 21pCHi-C
  • 15RRBS
  • 10Hi-C
  • 8WGBS
  • 7snATAC-seq
  • 6MeRIP-seq
  • 6single cell RNA-seq
  • 4STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 1FAIRE-seq
Assay category
  • 189DNA binding
  • 119DNA accessibility
  • 57Transcription
  • 23DNA methylation
  • 103D chromatin structure
Target of assay
  • 102transcription factor
  • 66histone
  • 66histone modification
  • 35broad histone mark
  • 31narrow histone mark
  • 24control
  • 15RNA binding protein
  • 11chromatin remodeller
  • 7recombinant protein
  • 3nucleotide modification
Date released
  • 74October, 2019
  • 56May, 2020
  • 43November, 2017
  • 32February, 2021
  • 32June, 2019
  • 26December, 2018
  • 24July, 2019
  • 23November, 2019
  • 21November, 2018
  • 18August, 2021
  • 16March, 2020
  • 14May, 2019
  • 14May, 2021
  • 13January, 2019
  • 7December, 2019
  • 6February, 2023
  • 6November, 2020
  • 3January, 2021
  • 2August, 2017
  • 1April, 2019
  • 1July, 2018
Available data
  • 291bam
  • 255bigWig
  • 215bed narrowPeak
  • 159bigBed narrowPeak
  • 111fastq
  • 69tsv
  • 24bed bed3+
  • 21bed broadPeak
  • 21bigBed broadPeak
  • 16bed bedMethyl
  • 16bigBed bedMethyl
  • 7bed bedgraph
  • 6bedpe bed3+
  • 5hdf5
  • 4hic
  • 3txt
  • 2ibed
  • 2tagAlign
  • 1bed bed3
  • 1tar
Organism
  • 432Homo sapiens
Biosample type
  • 170cell line
  • 150primary cell
  • 68tissue
  • 44in vitro differentiated cells
Organ
  • 79liver
  • 68epithelium
  • 55pancreas
  • 45blood
  • 45bodily fluid
  • 39kidney
  • 38vasculature
  • 35blood vessel
  • 19brain
  • 18vein
  • 16heart
  • 11connective tissue
  • 11musculature of body
  • 8embryo
  • 7artery
  • 5limb
  • 4eye
  • 1bone element
  • 1bone marrow
  • 1mammary gland
  • 1pericardium
  • 1thymus
Project
  • 403AMP
  • 23T1D
  • 6HPAP
Genome assembly (visualization)
  • 303hg19
  • 264GRCh38
Lab
  • 388AMP-T2D consortium
  • 19Kyle Gaulton, UCSD
  • 6Bing Ren, UCSD
  • 6Klaus Kaestner, Upenn
  • 6Rohit N. Kulkarni, M.D., Ph.D.
  • 4Katalin Susztak, Upenn
  • 3Struan F.A. Grant, CHOP
Audit category:
  • 83inconsistent ontology term
  • 2audit script error
  • 1inconsistent replicate
Audit category:
  • 6missing controlled_by
Audit category:
  • 8inconsistent control run_type
  • 7inconsistent control read length
  • 1inconsistent assembly
files.run_type!
  • single-ended
BIOSAMPLE
ASSAY

432 results

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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
pCHi-C
RRBS
Hi-C
WGBS
snATAC-seq
MeRIP-seq
single cell RNA-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
FAIRE-seq
cell line
HepG253152112
GM1287845
EndoC_BH122263
Panc11111
H1-hESC8
primary cell
CD4-positive, alpha-beta memory T cell22
naive thymus-derived CD4-positive, alpha-beta T cell22
endothelial cell of umbilical vein1611
macrophage11
skeletal muscle satellite cell8
tissue
islet of Langerhans1911
brain511
thoracic aorta7
heart51
liver51
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)1191
cardiomyocytes (cardiac muscle cell)12122
adipocyte41
Pancreatic progenitors (progenitor cell of endocrine pancreas)4
lymphocyte of B lineage (iPSC)111
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