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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 208ChIP-seq
  • 5MeRIP-seq
  • 3single cell RNA-seq
Assay category
  • 208DNA binding
  • 3Transcription
Target of assay
  • 795histone modification
  • 794histone
  • 408narrow histone mark
  • 386broad histone mark
  • 216control
  • 169transcription factor
  • 46RNA binding protein
  • 11chromatin remodeller
  • 7recombinant protein
  • 5nucleotide modification
  • 3other context
  • 3other post-translational modification
Date released
  • 39October, 2019
  • 24October, 2018
  • 23August, 2017
  • 23May, 2019
  • 23May, 2020
  • 16November, 2017
  • 14April, 2019
  • 12August, 2021
  • 9May, 2021
  • 8June, 2019
  • 5November, 2018
  • 5November, 2020
  • 4December, 2018
  • 3February, 2021
  • 3July, 2019
  • 2December, 2017
  • 2November, 2019
  • 1October, 2017
Available data
  • 179bam
  • 64tagAlign
  • 41fastq
  • 6bigWig
  • 3tsv
Organism
  • 216Homo sapiens
Biosample type
  • 155tissue
  • 27cell line
  • 19primary cell
  • 15in vitro differentiated cells
Organ
  • 41liver
  • 28pancreas
  • 27connective tissue
  • 26brain
  • 22adipose tissue
  • 20blood vessel
  • 20heart
  • 20vasculature
  • 17limb
  • 13epithelium
  • 12kidney
  • 11nerve
  • 9artery
  • 7spleen
  • 6musculature of body
  • 2blood
  • 2bodily fluid
  • 2vein
  • 1eye
Project
  • 216AMP
Genome assembly (visualization)
  • 6hg19
  • 3GRCh38
Lab
  • 199AMP-T2D consortium
  • 8Kyle Gaulton, UCSD
  • 5Rohit N. Kulkarni, M.D., Ph.D.
  • 4Bing Ren, UCSD
Audit category:
  • 13inconsistent ontology term
files.run_type!
  • single-ended
BIOSAMPLE
ASSAY

216 results

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Clear Filters
ChIP-seq
MeRIP-seq
single cell RNA-seq
tissue
liver30
tibial nerve11
subcutaneous adipose tissue10
islet of Langerhans62
omental fat pad7
cell line
HepG28
Panc16
EndoC_BH123
GM128782
smooth muscle cell of the coronary artery2
primary cell
CD8-positive, alpha-beta T cell3
cardiac fibroblast2
cerebellar granule cell2
endothelial cell of umbilical vein2
epithelial cell of proximal tubule2
in vitro differentiated cells
neural progenitor cell7
embryonic stem cell5
adipocyte2
pancreatic PP cell1
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