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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 795ChIP-seq
Assay category
  • 795DNA binding
Target of assay
  • 795histone modification
  • 794histone
  • 408narrow histone mark
  • 386broad histone mark
  • 216control
  • 169transcription factor
  • 46RNA binding protein
  • 11chromatin remodeller
  • 7recombinant protein
  • 5nucleotide modification
  • 3other context
  • 3other post-translational modification
Date released
  • 196October, 2019
  • 140May, 2021
  • 104August, 2017
  • 92May, 2019
  • 70November, 2017
  • 60April, 2019
  • 35May, 2024
  • 27May, 2020
  • 20August, 2021
  • 19June, 2019
  • 14October, 2018
  • 10November, 2019
  • 5October, 2017
  • 3March, 2020
Available data
  • 649bigWig
  • 648bed narrowPeak
  • 564bam
  • 299bigBed narrowPeak
  • 286tagAlign
  • 28bed broadPeak
  • 8fastq
  • 3bed bed3+
  • 2bigBed broadPeak
  • 1tagAlign bed3+
Organism
  • 795Homo sapiens
Biosample type
  • 562tissue
  • 164primary cell
  • 47in vitro differentiated cells
  • 22cell line
Organ
  • 177brain
  • 97heart
  • 69blood vessel
  • 69vasculature
  • 66liver
  • 52connective tissue
  • 51pancreas
  • 49limb
  • 42epithelium
  • 33musculature of body
  • 31adipose tissue
  • 30kidney
  • 24nerve
  • 20artery
  • 15vein
  • 4gonad
  • 4ovary
  • 3eye
  • 1lymph node
  • 1pituitary gland
Project
  • 707AMP
  • 88T1D
Genome assembly (visualization)
  • 586GRCh38
  • 564hg19
Lab
  • 623AMP-T2D consortium
  • 134Kyle Gaulton, UCSD
  • 35Patrick T. Ellinor, Broad
  • 3Bing Ren, UCSD
Audit category:
  • 31inconsistent ontology term
files.run_type!
  • single-ended
BIOSAMPLE
ASSAY

795 results

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Clear Filters
ChIP-seq
tissue
liver60
islet of Langerhans37
left cardiac atrium35
subcutaneous abdominal adipose tissue31
heart left ventricle24
primary cell
monocyte85
CD8-positive, alpha-beta T cell30
endothelial cell of umbilical vein15
epithelial cell of proximal tubule7
skeletal muscle satellite cell7
in vitro differentiated cells
embryonic stem cell20
neural progenitor cell14
adipocyte12
pancreatic PP cell1
cell line
EndoC_BH112
Panc17
HepG23
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