Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 92total RNA-seq
  • 51single cell RNA-seq
  • 49ATAC-seq
  • 47WGBS
  • 21snATAC-seq
  • 3Hi-C
Assay category
  • 143Transcription
  • 70DNA accessibility
  • 47DNA methylation
  • 33D chromatin structure
Date released
  • 134May, 2022
  • 76February, 2023
  • 37September, 2020
  • 7August, 2020
  • 6February, 2021
  • 3October, 2022
Available data
  • 152zippedFastqFolder
  • 108fastq
  • 10bigWig
  • 6tsv
  • 3bedpe bed3+
  • 3cool
  • 3hic
Organism
  • 263Homo sapiens
Biosample type
  • 263primary cell
Organ
  • 152epithelium
  • 152pancreas
Project
  • 263HPAP
Genome assembly (visualization)
  • 10GRCh38
  • 3hg19
Lab
  • 3912AMP-T2D consortium
  • 343Kyle Gaulton, UCSD
  • 263Klaus Kaestner, Upenn
  • 142Katalin Susztak, Upenn
  • 47KPMP
  • 40Karen Mohlke, UNC
  • 40Patrick T. Ellinor, Broad
  • 38Bing Ren, UCSD
  • 19Xin Sun, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 7Struan F.A. Grant, CHOP
  • 4Anna Gloyn, Oxford
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 3audit script error
files.run_type!
  • unknown
BIOSAMPLE
ASSAY

263 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
single cell RNA-seq
ATAC-seq
WGBS
snATAC-seq
Hi-C
primary cell
pancreatic alpha cell4229311
Langerhans cell5121
pancreatic beta cell1116161
exocrine cell39
pancreatic acinar cell41
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego