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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 130total RNA-seq
  • 118ChIP-seq
  • 99ATAC-seq
  • 85single cell RNA-seq
  • 52WGBS
  • 48snATAC-seq
  • 10DNase-seq
  • 1Hi-C
  • 1pCHi-C
Assay category
  • 215Transcription
  • 157DNA accessibility
  • 118DNA binding
  • 52DNA methylation
  • 13D chromatin structure
Target of assay
  • 68transcription factor
  • 39control
  • 17RNA binding protein
  • 10chromatin remodeller
  • 10histone modification
  • 9histone
  • 6narrow histone mark
  • 3broad histone mark
  • 3other context
  • 3other post-translational modification
Date released
  • 158May, 2022
  • 110August, 2017
  • 45February, 2021
  • 44November, 2017
  • 41September, 2018
  • 37October, 2018
  • 28November, 2018
  • 25September, 2020
  • 9July, 2018
  • 8December, 2018
  • 7April, 2018
  • 7August, 2020
  • 7October, 2017
  • 5January, 2019
  • 5September, 2017
  • 4December, 2017
  • 2August, 2018
  • 1June, 2018
  • 1March, 2019
Available data
  • 410fastq
  • 328bam
  • 275bigWig
  • 146tsv
  • 137bed narrowPeak
  • 135zippedFastqFolder
  • 104bigBed narrowPeak
  • 12bed broadPeak
  • 10bigBed broadPeak
  • 8bed bed3+
  • 6txt
  • 5bed bedMethyl
  • 5bigBed bedMethyl
  • 2csv
  • 1bedpe bed3+
Organism
  • 544Homo sapiens
Biosample type
  • 281primary cell
  • 202tissue
  • 59cell line
  • 2in vitro differentiated cells
Organ
  • 295pancreas
  • 157epithelium
  • 80liver
  • 45blood
  • bodily fluid
  • 27connective tissue
  • 26adipose tissue
  • 17spleen
  • 1brain
Project
  • 333AMP
  • 211HPAP
Genome assembly (visualization)
  • 278hg19
  • 272GRCh38
Lab
  • 307AMP-T2D consortium
  • 211Klaus Kaestner, Upenn
  • 24Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 27audit script error
Audit category:
  • 7missing controlled_by
Audit category:
  • 9inconsistent control run_type
  • 8inconsistent control read length
  • 1inconsistent assembly
organ_slims!
  • bodily fluid
BIOSAMPLE
ASSAY

544 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
WGBS
snATAC-seq
DNase-seq
Hi-C
pCHi-C
primary cell
Langerhans cell6748
pancreatic alpha cell1035331
pancreatic beta cell1023216
pancreatic acinar cell492
pancreatic ductal cell442
tissue
islet of Langerhans9720
body of pancreas13422
spleen13121
liver132
subcutaneous adipose tissue121
cell line
HepG255211
in vitro differentiated cells
adipocyte1
white fat cell1
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