Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
141
ChIP-seq
130
total RNA-seq
97
ATAC-seq
85
single cell RNA-seq
52
WGBS
48
snATAC-seq
8
DNase-seq
1
Hi-C
Assay category
215
Transcription
153
DNA accessibility
141
DNA binding
52
DNA methylation
1
3D chromatin structure
Target of assay
104
transcription factor
24
control
16
RNA binding protein
11
chromatin remodeller
10
histone modification
9
histone
6
narrow histone mark
3
broad histone mark
3
other context
3
other post-translational modification
Date released
158
May, 2022
108
August, 2017
45
February, 2021
44
November, 2017
41
September, 2018
39
November, 2018
33
December, 2018
25
September, 2020
15
October, 2018
13
January, 2019
9
July, 2018
7
April, 2018
7
August, 2020
6
October, 2017
5
September, 2017
4
December, 2017
1
August, 2018
1
June, 2018
1
March, 2019
Available data
428
fastq
347
bam
309
bigWig
171
bed narrowPeak
146
tsv
139
bigBed narrowPeak
135
zippedFastqFolder
10
bed broadPeak
8
bigBed broadPeak
7
bed bed3+
6
txt
5
bed bedMethyl
5
bigBed bedMethyl
2
csv
Organism
562
Homo sapiens
Biosample type
281
primary cell
177
tissue
104
cell line
Organ
295
pancreas
157
epithelium
80
liver
45
blood
45
bodily fluid
connective tissue
26
adipose tissue
17
spleen
1
brain
Project
351
AMP
211
HPAP
Genome assembly (visualization)
312
hg19
306
GRCh38
Lab
325
AMP-T2D consortium
211
Klaus Kaestner, Upenn
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
audit script error
Audit category:
7
missing controlled_by
Audit category:
9
inconsistent control run_type
8
inconsistent control read length
1
inconsistent assembly
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
562 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
WGBS
snATAC-seq
DNase-seq
Hi-C
primary cell
Langerhans cell
67
48
pancreatic alpha cell
10
35
3
31
pancreatic beta cell
10
23
2
16
pancreatic acinar cell
4
9
2
pancreatic ductal cell
4
4
2
+ See 4 more…
tissue
islet of Langerhans
97
20
body of pancreas
13
4
2
2
spleen
13
1
2
1
liver
13
2
right lobe of liver
4
1
1
+ See 1 more…
cell line
HepG2
52
5
1
1
GM12878
45
See all biosamples
Download