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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 141ChIP-seq
  • 130total RNA-seq
  • 97ATAC-seq
  • 85single cell RNA-seq
  • 52WGBS
  • 48snATAC-seq
  • 8DNase-seq
  • 1Hi-C
Assay category
  • 215Transcription
  • 153DNA accessibility
  • 141DNA binding
  • 52DNA methylation
  • 13D chromatin structure
Target of assay
  • 104transcription factor
  • 24control
  • 16RNA binding protein
  • 11chromatin remodeller
  • 10histone modification
  • 9histone
  • 6narrow histone mark
  • 3broad histone mark
  • 3other context
  • 3other post-translational modification
Date released
  • 158May, 2022
  • 108August, 2017
  • 45February, 2021
  • 44November, 2017
  • 41September, 2018
  • 39November, 2018
  • 33December, 2018
  • 25September, 2020
  • 15October, 2018
  • 13January, 2019
  • 9July, 2018
  • 7April, 2018
  • 7August, 2020
  • 6October, 2017
  • 5September, 2017
  • 4December, 2017
  • 1August, 2018
  • 1June, 2018
  • 1March, 2019
Available data
  • 428fastq
  • 347bam
  • 309bigWig
  • 171bed narrowPeak
  • 146tsv
  • 139bigBed narrowPeak
  • 135zippedFastqFolder
  • 10bed broadPeak
  • 8bigBed broadPeak
  • 7bed bed3+
  • 6txt
  • 5bed bedMethyl
  • 5bigBed bedMethyl
  • 2csv
Organism
  • 562Homo sapiens
Biosample type
  • 281primary cell
  • 177tissue
  • 104cell line
Organ
  • 295pancreas
  • 157epithelium
  • 80liver
  • 45blood
  • 45bodily fluid
  • connective tissue
  • 26adipose tissue
  • 17spleen
  • 1brain
Project
  • 351AMP
  • 211HPAP
Genome assembly (visualization)
  • 312hg19
  • 306GRCh38
Lab
  • 325AMP-T2D consortium
  • 211Klaus Kaestner, Upenn
  • 24Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 27audit script error
Audit category:
  • 7missing controlled_by
Audit category:
  • 9inconsistent control run_type
  • 8inconsistent control read length
  • 1inconsistent assembly
organ_slims!
  • connective tissue
BIOSAMPLE
ASSAY

562 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
WGBS
snATAC-seq
DNase-seq
Hi-C
primary cell
Langerhans cell6748
pancreatic alpha cell1035331
pancreatic beta cell1023216
pancreatic acinar cell492
pancreatic ductal cell442
tissue
islet of Langerhans9720
body of pancreas13422
spleen13121
liver132
right lobe of liver411
cell line
HepG252511
GM1287845
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