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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
163
ChIP-seq
102
total RNA-seq
74
single cell RNA-seq
48
snATAC-seq
28
ATAC-seq
10
DNase-seq
5
WGBS
1
Hi-C
1
pCHi-C
Assay category
176
Transcription
163
DNA binding
86
DNA accessibility
5
DNA methylation
1
3D chromatin structure
Target of assay
109
transcription factor
41
control
21
RNA binding protein
11
chromatin remodeller
10
histone modification
9
histone
6
narrow histone mark
3
broad histone mark
3
other context
3
other post-translational modification
Date released
107
August, 2017
78
May, 2022
44
November, 2017
40
November, 2018
39
February, 2021
35
October, 2018
33
December, 2018
22
September, 2020
13
January, 2019
7
October, 2017
4
December, 2017
4
July, 2018
2
April, 2018
1
August, 2018
1
June, 2018
1
March, 2019
1
September, 2018
Available data
378
fastq
312
bam
247
bigWig
158
bed narrowPeak
125
bigBed narrowPeak
101
tsv
55
zippedFastqFolder
12
bed broadPeak
10
bigBed broadPeak
8
bed bed3+
6
txt
5
bed bedMethyl
5
bigBed bedMethyl
2
csv
1
bedpe bed3+
Organism
432
Homo sapiens
Biosample type
202
tissue
124
primary cell
104
cell line
2
in vitro differentiated cells
Organ
295
pancreas
epithelium
80
liver
45
blood
45
bodily fluid
27
connective tissue
26
adipose tissue
17
spleen
1
brain
Project
317
AMP
115
HPAP
Genome assembly (visualization)
260
hg19
244
GRCh38
Lab
291
AMP-T2D consortium
115
Klaus Kaestner, Upenn
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
audit script error
Audit category:
7
missing controlled_by
Audit category:
9
inconsistent control run_type
8
inconsistent control read length
1
inconsistent assembly
organ_slims!
epithelium
BIOSAMPLE
ASSAY
432 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
tissue
islet of Langerhans
97
20
body of pancreas
13
4
2
2
spleen
13
1
1
2
liver
13
2
subcutaneous adipose tissue
12
1
+ See 3 more…
primary cell
Langerhans cell
67
48
pancreatic cell
5
mesenchymal cell
2
skeletal muscle myoblast
1
1
cell line
HepG2
52
5
1
1
GM12878
45
in vitro differentiated cells
adipocyte
1
white fat cell
1
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