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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 163ChIP-seq
  • 102total RNA-seq
  • 74single cell RNA-seq
  • 48snATAC-seq
  • 28ATAC-seq
  • 10DNase-seq
  • 5WGBS
  • 1Hi-C
  • 1pCHi-C
Assay category
  • 176Transcription
  • 163DNA binding
  • 86DNA accessibility
  • 5DNA methylation
  • 13D chromatin structure
Target of assay
  • 109transcription factor
  • 41control
  • 21RNA binding protein
  • 11chromatin remodeller
  • 10histone modification
  • 9histone
  • 6narrow histone mark
  • 3broad histone mark
  • 3other context
  • 3other post-translational modification
Date released
  • 107August, 2017
  • 78May, 2022
  • 44November, 2017
  • 40November, 2018
  • 39February, 2021
  • 35October, 2018
  • 33December, 2018
  • 22September, 2020
  • 13January, 2019
  • 7October, 2017
  • 4December, 2017
  • 4July, 2018
  • 2April, 2018
  • 1August, 2018
  • 1June, 2018
  • 1March, 2019
  • 1September, 2018
Available data
  • 378fastq
  • 312bam
  • 247bigWig
  • 158bed narrowPeak
  • 125bigBed narrowPeak
  • 101tsv
  • 55zippedFastqFolder
  • 12bed broadPeak
  • 10bigBed broadPeak
  • 8bed bed3+
  • 6txt
  • 5bed bedMethyl
  • 5bigBed bedMethyl
  • 2csv
  • 1bedpe bed3+
Organism
  • 432Homo sapiens
Biosample type
  • 202tissue
  • 124primary cell
  • 104cell line
  • 2in vitro differentiated cells
Organ
  • 295pancreas
  • epithelium
  • 80liver
  • 45blood
  • 45bodily fluid
  • 27connective tissue
  • 26adipose tissue
  • 17spleen
  • 1brain
Project
  • 317AMP
  • 115HPAP
Genome assembly (visualization)
  • 260hg19
  • 244GRCh38
Lab
  • 291AMP-T2D consortium
  • 115Klaus Kaestner, Upenn
  • 24Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 27audit script error
Audit category:
  • 7missing controlled_by
Audit category:
  • 9inconsistent control run_type
  • 8inconsistent control read length
  • 1inconsistent assembly
organ_slims!
  • epithelium
BIOSAMPLE
ASSAY

432 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
tissue
islet of Langerhans9720
body of pancreas13422
spleen13112
liver132
subcutaneous adipose tissue121
primary cell
Langerhans cell6748
pancreatic cell5
mesenchymal cell2
skeletal muscle myoblast11
cell line
HepG252511
GM1287845
in vitro differentiated cells
adipocyte1
white fat cell1
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