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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 125total RNA-seq
  • 98ATAC-seq
  • 94ChIP-seq
  • 85single cell RNA-seq
  • 51WGBS
  • 48snATAC-seq
  • 7DNase-seq
  • 1pCHi-C
Assay category
  • 210Transcription
  • 153DNA accessibility
  • 94DNA binding
  • 51DNA methylation
Target of assay
  • 60transcription factor
  • 31control
  • 13RNA binding protein
  • 3other context
  • 3other post-translational modification
  • 1chromatin remodeller
  • 1histone
  • 1histone modification
  • 1narrow histone mark
Date released
  • 158May, 2022
  • 96August, 2017
  • 45February, 2021
  • 41September, 2018
  • 37October, 2018
  • 32December, 2018
  • 28November, 2018
  • 25September, 2020
  • 9July, 2018
  • 8January, 2019
  • 7April, 2018
  • 7August, 2020
  • 7October, 2017
  • 5September, 2017
  • 2August, 2018
  • 1June, 2018
  • 1March, 2019
Available data
  • 375fastq
  • 294bam
  • 249bigWig
  • 141tsv
  • 135zippedFastqFolder
  • 117bed narrowPeak
  • 93bigBed narrowPeak
  • 9bed broadPeak
  • 7bigBed broadPeak
  • 6txt
  • 5bed bed3+
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 2csv
  • 1bedpe bed3+
Organism
  • 509Homo sapiens
Biosample type
  • 281primary cell
  • 181tissue
  • 45cell line
  • 2in vitro differentiated cells
Organ
  • 295pancreas
  • 157epithelium
  • liver
  • 45blood
  • 45bodily fluid
  • 27connective tissue
  • 26adipose tissue
  • 17spleen
  • 1brain
Project
  • 298AMP
  • 211HPAP
Genome assembly (visualization)
  • 253hg19
  • 248GRCh38
Lab
  • 272AMP-T2D consortium
  • 211Klaus Kaestner, Upenn
  • 24Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 27audit script error
Audit category:
  • 1inconsistent assembly
  • 1inconsistent control read length
  • 1inconsistent control run_type
organ_slims!
  • liver
BIOSAMPLE
ASSAY

509 results

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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
WGBS
snATAC-seq
DNase-seq
pCHi-C
primary cell
Langerhans cell6748
pancreatic alpha cell1035331
pancreatic beta cell1023216
pancreatic acinar cell492
pancreatic ductal cell442
tissue
islet of Langerhans9720
body of pancreas41322
spleen11321
subcutaneous adipose tissue112
omental fat pad1101
cell line
GM1287845
in vitro differentiated cells
adipocyte1
white fat cell1
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