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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
150
ChIP-seq
74
single cell RNA-seq
48
snATAC-seq
8
DNase-seq
5
total RNA-seq
4
ATAC-seq
3
WGBS
1
Hi-C
1
pCHi-C
Assay category
150
DNA binding
79
Transcription
60
DNA accessibility
3
DNA methylation
1
3D chromatin structure
Target of assay
101
transcription factor
36
control
17
RNA binding protein
11
chromatin remodeller
10
histone modification
9
histone
6
narrow histone mark
3
broad histone mark
3
other context
3
other post-translational modification
Date released
54
May, 2022
44
November, 2017
39
February, 2021
36
November, 2018
33
December, 2018
22
October, 2018
22
September, 2020
18
August, 2017
13
January, 2019
4
December, 2017
2
April, 2018
2
July, 2018
2
October, 2017
1
August, 2018
1
June, 2018
1
September, 2018
Available data
240
fastq
175
bam
139
bigWig
126
bed narrowPeak
115
bigBed narrowPeak
55
zippedFastqFolder
10
tsv
8
bed broadPeak
8
bigBed broadPeak
6
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
2
csv
1
bedpe bed3+
Organism
294
Homo sapiens
Biosample type
124
primary cell
104
cell line
64
tissue
2
in vitro differentiated cells
Organ
pancreas
157
epithelium
80
liver
45
blood
45
bodily fluid
27
connective tissue
26
adipose tissue
17
spleen
1
brain
Project
179
AMP
115
HPAP
Genome assembly (visualization)
136
GRCh38
136
hg19
Lab
179
AMP-T2D consortium
115
Klaus Kaestner, Upenn
Audit category:
27
audit script error
Audit category:
7
missing controlled_by
Audit category:
9
inconsistent control run_type
8
inconsistent control read length
1
inconsistent assembly
organ_slims!
pancreas
BIOSAMPLE
ASSAY
294 results
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ChIP-seq
single cell RNA-seq
snATAC-seq
DNase-seq
total RNA-seq
ATAC-seq
WGBS
Hi-C
pCHi-C
primary cell
Langerhans cell
67
48
pancreatic cell
5
mesenchymal cell
2
skeletal muscle myoblast
1
1
cell line
HepG2
52
5
1
1
GM12878
45
tissue
spleen
13
1
1
2
liver
13
2
subcutaneous adipose tissue
12
1
omental fat pad
10
1
1
right lobe of liver
4
1
1
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in vitro differentiated cells
adipocyte
1
white fat cell
1
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