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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 150ChIP-seq
  • 74single cell RNA-seq
  • 48snATAC-seq
  • 8DNase-seq
  • 5total RNA-seq
  • 4ATAC-seq
  • 3WGBS
  • 1Hi-C
  • 1pCHi-C
Assay category
  • 150DNA binding
  • 79Transcription
  • 60DNA accessibility
  • 3DNA methylation
  • 13D chromatin structure
Target of assay
  • 101transcription factor
  • 36control
  • 17RNA binding protein
  • 11chromatin remodeller
  • 10histone modification
  • 9histone
  • 6narrow histone mark
  • 3broad histone mark
  • 3other context
  • 3other post-translational modification
Date released
  • 54May, 2022
  • 44November, 2017
  • 39February, 2021
  • 36November, 2018
  • 33December, 2018
  • 22October, 2018
  • 22September, 2020
  • 18August, 2017
  • 13January, 2019
  • 4December, 2017
  • 2April, 2018
  • 2July, 2018
  • 2October, 2017
  • 1August, 2018
  • 1June, 2018
  • 1September, 2018
Available data
  • 240fastq
  • 175bam
  • 139bigWig
  • 126bed narrowPeak
  • 115bigBed narrowPeak
  • 55zippedFastqFolder
  • 10tsv
  • 8bed broadPeak
  • 8bigBed broadPeak
  • 6bed bed3+
  • 3bed bedMethyl
  • 3bigBed bedMethyl
  • 2csv
  • 1bedpe bed3+
Organism
  • 294Homo sapiens
Biosample type
  • 124primary cell
  • 104cell line
  • 64tissue
  • 2in vitro differentiated cells
Organ
  • pancreas
  • 157epithelium
  • 80liver
  • 45blood
  • 45bodily fluid
  • 27connective tissue
  • 26adipose tissue
  • 17spleen
  • 1brain
Project
  • 179AMP
  • 115HPAP
Genome assembly (visualization)
  • 136GRCh38
  • 136hg19
Lab
  • 179AMP-T2D consortium
  • 115Klaus Kaestner, Upenn
Audit category:
  • 27audit script error
Audit category:
  • 7missing controlled_by
Audit category:
  • 9inconsistent control run_type
  • 8inconsistent control read length
  • 1inconsistent assembly
organ_slims!
  • pancreas
BIOSAMPLE
ASSAY

294 results

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Clear Filters
ChIP-seq
single cell RNA-seq
snATAC-seq
DNase-seq
total RNA-seq
ATAC-seq
WGBS
Hi-C
pCHi-C
primary cell
Langerhans cell6748
pancreatic cell5
mesenchymal cell2
skeletal muscle myoblast11
cell line
HepG252511
GM1287845
tissue
spleen13112
liver132
subcutaneous adipose tissue121
omental fat pad1011
right lobe of liver411
in vitro differentiated cells
adipocyte1
white fat cell1
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