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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 69ChIP-seq
  • 5total RNA-seq
  • 3DNase-seq
  • 1ATAC-seq
  • 1Hi-C
  • 1WGBS
Assay category
  • 69DNA binding
  • 5Transcription
  • 4DNA accessibility
  • 13D chromatin structure
  • 1DNA methylation
Target of assay
  • 49transcription factor
  • 10chromatin remodeller
  • 10control
  • 9histone modification
  • 8RNA binding protein
  • 8histone
  • 5narrow histone mark
  • 3broad histone mark
Date released
  • 44November, 2017
  • 14August, 2017
  • 12November, 2018
  • 5January, 2019
  • 4December, 2017
  • 1December, 2018
Available data
  • 80fastq
  • 79bam
  • 69bigWig
  • 63bed narrowPeak
  • 54bigBed narrowPeak
  • 5tsv
  • 3bed bed3+
  • 3bed broadPeak
  • 3bigBed broadPeak
  • 1bed bedMethyl
  • 1bigBed bedMethyl
Organism
  • 80Homo sapiens
Biosample type
  • 59cell line
  • 21tissue
Organ
  • 295pancreas
  • 157epithelium
  • 80liver
  • 45blood
  • 45bodily fluid
  • 27connective tissue
  • 26adipose tissue
  • 17spleen
  • 1brain
Project
  • 80AMP
Genome assembly (visualization)
  • 68hg19
  • 67GRCh38
Lab
  • 80AMP-T2D consortium
Audit category:
  • 7missing controlled_by
Audit category:
  • 8inconsistent control run_type
  • 7inconsistent control read length
BIOSAMPLE
ASSAY

80 results

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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
Hi-C
WGBS
cell line
HepG252511
tissue
liver132
right lobe of liver411
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