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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 125total RNA-seq
  • 99ATAC-seq
  • 84single cell RNA-seq
  • 65ChIP-seq
  • 48snATAC-seq
  • 45WGBS
  • 8DNase-seq
  • 1pCHi-C
Assay category
  • 209Transcription
  • 155DNA accessibility
  • 65DNA binding
  • 45DNA methylation
Target of assay
  • 35control
  • 22transcription factor
  • 10RNA binding protein
  • 8histone modification
  • 7histone
  • 4narrow histone mark
  • 3broad histone mark
  • 3other context
  • 3other post-translational modification
Date released
  • 158May, 2022
  • 107August, 2017
  • 41September, 2018
  • 39February, 2021
  • 37October, 2018
  • 25September, 2020
  • 19November, 2018
  • 8July, 2018
  • 7April, 2018
  • 7August, 2020
  • 7December, 2018
  • 7October, 2017
  • 5September, 2017
  • 4December, 2017
  • 2August, 2018
  • 1June, 2018
  • 1March, 2019
Available data
  • 341fastq
  • 266bam
  • 217bigWig
  • 135zippedFastqFolder
  • 134tsv
  • 86bed narrowPeak
  • 53bigBed narrowPeak
  • 10bed broadPeak
  • 8bed bed3+
  • 8bigBed broadPeak
  • 6txt
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 2csv
  • 1bedpe bed3+
Organism
  • 475Homo sapiens
Biosample type
  • 272primary cell
  • 202tissue
  • 1in vitro differentiated cells
Organ
  • 289pancreas
  • 151epithelium
  • 26adipose tissue
  • 26connective tissue
  • 21liver
  • 17spleen
  • 1brain
Project
  • 270AMP
  • 205HPAP
Genome assembly (visualization)
  • 221hg19
  • 217GRCh38
Lab
  • 244AMP-T2D consortium
  • 205Klaus Kaestner, Upenn
  • 24Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 27audit script error
replication_type!
  • isogenic
BIOSAMPLE
ASSAY

475 results

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Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
primary cell
Langerhans cell6748
pancreatic alpha cell1035325
pancreatic beta cell1023216
pancreatic acinar cell492
pancreatic ductal cell442
tissue
islet of Langerhans9720
body of pancreas41322
spleen11321
liver132
subcutaneous adipose tissue112
in vitro differentiated cells
white fat cell1
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