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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 98ChIP-seq
  • 17single cell RNA-seq
  • 7WGBS
  • 7total RNA-seq
  • 3DNase-seq
  • 2ATAC-seq
  • 1Hi-C
Assay category
  • 98DNA binding
  • 24Transcription
  • 7DNA methylation
  • 5DNA accessibility
  • 13D chromatin structure
Target of assay
  • 87transcription factor
  • 11RNA binding protein
  • 11chromatin remodeller
  • 6control
  • 2histone
  • 2histone modification
  • 2narrow histone mark
Date released
  • 44November, 2017
  • 26December, 2018
  • 22November, 2018
  • 13January, 2019
  • 9July, 2018
  • 7April, 2018
  • 6February, 2021
  • 3August, 2017
  • 1August, 2018
  • 1June, 2018
  • 1March, 2019
  • 1October, 2017
  • 1September, 2018
Available data
  • 135fastq
  • 126bam
  • 120bigWig
  • 95bed narrowPeak
  • 95bigBed narrowPeak
  • 29tsv
  • 5bed broadPeak
  • 3bigBed broadPeak
  • 1bed bed3+
  • 1bed bedMethyl
  • 1bigBed bedMethyl
  • 1csv
Organism
  • 135Homo sapiens
Biosample type
  • 104cell line
  • 25primary cell
  • 5tissue
  • 1in vitro differentiated cells
Organ
  • 60liver
  • 45blood
  • 45bodily fluid
  • 21pancreas
  • 17epithelium
  • 1connective tissue
Project
  • 129AMP
  • 6HPAP
Genome assembly (visualization)
  • 119hg19
  • 117GRCh38
Lab
  • 127AMP-T2D consortium
  • 6Klaus Kaestner, Upenn
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 7missing controlled_by
Audit category:
  • 9inconsistent control run_type
  • 8inconsistent control read length
  • 1inconsistent assembly
replication_type!
  • unreplicated
BIOSAMPLE
ASSAY

135 results

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Clear Filters
ChIP-seq
single cell RNA-seq
WGBS
total RNA-seq
DNase-seq
ATAC-seq
Hi-C
cell line
HepG252151
GM1287845
primary cell
pancreatic alpha cell36
pancreatic cell4
mesenchymal cell2
pancreatic acinar cell2
pancreatic beta cell2
tissue
islet of Langerhans22
liver1
in vitro differentiated cells
adipocyte1
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