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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
ChIP-seq
17
single cell RNA-seq
7
WGBS
7
total RNA-seq
3
DNase-seq
2
ATAC-seq
1
Hi-C
Assay category
98
DNA binding
24
Transcription
7
DNA methylation
5
DNA accessibility
1
3D chromatin structure
Target of assay
87
transcription factor
11
RNA binding protein
11
chromatin remodeller
6
control
2
histone
2
histone modification
2
narrow histone mark
Date released
44
November, 2017
26
December, 2018
22
November, 2018
13
January, 2019
9
July, 2018
7
April, 2018
6
February, 2021
3
August, 2017
1
August, 2018
1
June, 2018
1
March, 2019
1
October, 2017
1
September, 2018
Available data
135
fastq
126
bam
120
bigWig
95
bed narrowPeak
95
bigBed narrowPeak
29
tsv
5
bed broadPeak
3
bigBed broadPeak
1
bed bed3+
1
bed bedMethyl
1
bigBed bedMethyl
1
csv
Organism
135
Homo sapiens
Biosample type
104
cell line
25
primary cell
5
tissue
1
in vitro differentiated cells
Organ
60
liver
45
blood
45
bodily fluid
21
pancreas
17
epithelium
1
connective tissue
Project
129
AMP
6
HPAP
Genome assembly (visualization)
119
hg19
117
GRCh38
Lab
127
AMP-T2D consortium
6
Klaus Kaestner, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
7
missing controlled_by
Audit category:
9
inconsistent control run_type
8
inconsistent control read length
1
inconsistent assembly
replication_type!
unreplicated
BIOSAMPLE
ASSAY
135 results
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ChIP-seq
single cell RNA-seq
WGBS
total RNA-seq
DNase-seq
ATAC-seq
Hi-C
cell line
HepG2
52
1
5
1
GM12878
45
primary cell
pancreatic alpha cell
3
6
pancreatic cell
4
mesenchymal cell
2
pancreatic acinar cell
2
pancreatic beta cell
2
+ See 3 more…
tissue
islet of Langerhans
2
2
liver
1
in vitro differentiated cells
adipocyte
1
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