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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
ChIP-seq
7
WGBS
5
total RNA-seq
2
DNase-seq
1
Hi-C
1
single cell RNA-seq
Assay category
98
DNA binding
7
DNA methylation
6
Transcription
2
DNA accessibility
1
3D chromatin structure
Target of assay
87
transcription factor
11
RNA binding protein
11
chromatin remodeller
6
control
2
histone
2
histone modification
2
narrow histone mark
Date released
44
November, 2017
26
December, 2018
21
November, 2018
13
January, 2019
6
February, 2021
3
August, 2017
1
July, 2018
Available data
114
fastq
107
bam
101
bigWig
94
bed narrowPeak
94
bigBed narrowPeak
12
tsv
2
bed broadPeak
2
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
114
Homo sapiens
Biosample type
104
cell line
9
primary cell
1
in vitro differentiated cells
Organ
59
liver
45
blood
45
bodily fluid
6
epithelium
6
pancreas
1
connective tissue
Project
108
AMP
6
HPAP
Genome assembly (visualization)
100
hg19
98
GRCh38
Lab
108
AMP-T2D consortium
6
Klaus Kaestner, Upenn
Audit category:
7
missing controlled_by
Audit category:
9
inconsistent control run_type
8
inconsistent control read length
1
inconsistent assembly
BIOSAMPLE
ASSAY
114 results
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ChIP-seq
WGBS
total RNA-seq
DNase-seq
Hi-C
single cell RNA-seq
cell line
HepG2
52
1
5
1
GM12878
45
primary cell
pancreatic alpha cell
6
skeletal muscle myoblast
1
1
pancreatic cell
1
in vitro differentiated cells
adipocyte
1
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