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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 123total RNA-seq
  • 97ATAC-seq
  • 68single cell RNA-seq
  • 65ChIP-seq
  • 48snATAC-seq
  • 45WGBS
  • 7DNase-seq
  • 1pCHi-C
Assay category
  • 191Transcription
  • 152DNA accessibility
  • 65DNA binding
  • 45DNA methylation
Target of assay
  • 35control
  • 22transcription factor
  • 10RNA binding protein
  • 8histone modification
  • 7histone
  • 4narrow histone mark
  • 3broad histone mark
  • 3other context
  • 3other post-translational modification
Date released
  • 158May, 2022
  • 107August, 2017
  • 40September, 2018
  • 39February, 2021
  • 37October, 2018
  • 25September, 2020
  • 18November, 2018
  • 7August, 2020
  • 7December, 2018
  • 6October, 2017
  • 5September, 2017
  • 4December, 2017
  • 1August, 2018
Available data
  • 320fastq
  • 247bam
  • 198bigWig
  • 135zippedFastqFolder
  • 117tsv
  • 85bed narrowPeak
  • 52bigBed narrowPeak
  • 7bed bed3+
  • 7bed broadPeak
  • 7bigBed broadPeak
  • 6txt
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 1bedpe bed3+
  • 1csv
Organism
  • 454Homo sapiens
Biosample type
  • 256primary cell
  • 197tissue
  • 1in vitro differentiated cells
Organ
  • 274pancreas
  • 140epithelium
  • 26adipose tissue
  • 26connective tissue
  • 20liver
  • 17spleen
  • 1brain
Project
  • 249AMP
  • 205HPAP
Genome assembly (visualization)
  • 202hg19
  • 198GRCh38
Lab
  • 225AMP-T2D consortium
  • 205Klaus Kaestner, Upenn
  • 24Kyle Gaulton, UCSD
Audit category:
  • 27audit script error
BIOSAMPLE
ASSAY

454 results

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Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
primary cell
Langerhans cell6748
pancreatic alpha cell103525
pancreatic beta cell102316
pancreatic acinar cell49
pancreatic ductal cell44
tissue
islet of Langerhans9518
body of pancreas41322
spleen11321
liver131
subcutaneous adipose tissue112
in vitro differentiated cells
white fat cell1
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