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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 142ChIP-seq
  • 130total RNA-seq
  • 99ATAC-seq
  • 85single cell RNA-seq
  • 52WGBS
  • 48snATAC-seq
  • 10DNase-seq
  • 1Hi-C
  • 1pCHi-C
Assay category
  • 215Transcription
  • 157DNA accessibility
  • 142DNA binding
  • 52DNA methylation
  • 13D chromatin structure
Target of assay
  • 109transcription factor
  • 41control
  • RNA binding protein
  • 11chromatin remodeller
  • 10histone modification
  • 9histone
  • 6narrow histone mark
  • 3broad histone mark
  • 3other context
  • 3other post-translational modification
Date released
  • 158May, 2022
  • 110August, 2017
  • 45February, 2021
  • 41September, 2018
  • 38November, 2017
  • 38November, 2018
  • 31December, 2018
  • 28October, 2018
  • 25September, 2020
  • 12January, 2019
  • 9July, 2018
  • 7April, 2018
  • 7August, 2020
  • 7October, 2017
  • 5September, 2017
  • 3December, 2017
  • 2August, 2018
  • 1June, 2018
  • 1March, 2019
Available data
  • 434fastq
  • 352bam
  • 297bigWig
  • 159bed narrowPeak
  • 146tsv
  • 135zippedFastqFolder
  • 126bigBed narrowPeak
  • 12bed broadPeak
  • 10bigBed broadPeak
  • 8bed bed3+
  • 6txt
  • 5bed bedMethyl
  • 5bigBed bedMethyl
  • 2csv
  • 1bedpe bed3+
Organism
  • 568Homo sapiens
Biosample type
  • 281primary cell
  • 192tissue
  • 93cell line
  • 2in vitro differentiated cells
Organ
  • 291pancreas
  • 157epithelium
  • 72liver
  • 41blood
  • 41bodily fluid
  • 22connective tissue
  • 21adipose tissue
  • 17spleen
  • 1brain
Project
  • 357AMP
  • 211HPAP
Genome assembly (visualization)
  • 300hg19
  • 295GRCh38
Lab
  • 331AMP-T2D consortium
  • 211Klaus Kaestner, Upenn
  • 24Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 27audit script error
Audit category:
  • 5missing controlled_by
Audit category:
  • 6inconsistent control run_type
  • 5inconsistent control read length
  • 1inconsistent assembly
target.investigated_as!
  • RNA binding protein
BIOSAMPLE
ASSAY

568 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
WGBS
snATAC-seq
DNase-seq
Hi-C
pCHi-C
primary cell
Langerhans cell6748
pancreatic alpha cell1035331
pancreatic beta cell1023216
pancreatic acinar cell492
pancreatic ductal cell442
tissue
islet of Langerhans9720
body of pancreas9422
spleen13121
liver132
subcutaneous adipose tissue101
cell line
HepG245511
GM1287841
in vitro differentiated cells
adipocyte1
white fat cell1
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