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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 142ChIP-seq
  • 130total RNA-seq
  • 99ATAC-seq
  • 85single cell RNA-seq
  • 48snATAC-seq
  • 10DNase-seq
  • 5WGBS
  • 1Hi-C
  • 1pCHi-C
Assay category
  • 215Transcription
  • 157DNA accessibility
  • 142DNA binding
  • 5DNA methylation
  • 13D chromatin structure
Target of assay
  • 109transcription factor
  • 41control
  • RNA binding protein
  • 11chromatin remodeller
  • 10histone modification
  • 9histone
  • 6narrow histone mark
  • 3broad histone mark
  • 3other context
  • 3other post-translational modification
Date released
  • 117May, 2022
  • 110August, 2017
  • 41September, 2018
  • 39February, 2021
  • 38November, 2017
  • 38November, 2018
  • 31December, 2018
  • 28October, 2018
  • 25September, 2020
  • 12January, 2019
  • 9July, 2018
  • 7April, 2018
  • 7August, 2020
  • 7October, 2017
  • 5September, 2017
  • 3December, 2017
  • 2August, 2018
  • 1June, 2018
  • 1March, 2019
Available data
  • 428fastq
  • 352bam
  • 297bigWig
  • 159bed narrowPeak
  • 140tsv
  • 126bigBed narrowPeak
  • 94zippedFastqFolder
  • 12bed broadPeak
  • 10bigBed broadPeak
  • 8bed bed3+
  • 6txt
  • 5bed bedMethyl
  • 5bigBed bedMethyl
  • 2csv
  • 1bedpe bed3+
Organism
  • 521Homo sapiens
Biosample type
  • 234primary cell
  • 192tissue
  • 93cell line
  • 2in vitro differentiated cells
Organ
  • 244pancreas
  • 110epithelium
  • 72liver
  • 41blood
  • 41bodily fluid
  • 22connective tissue
  • 21adipose tissue
  • 17spleen
  • 1brain
Project
  • 357AMP
  • 164HPAP
Genome assembly (visualization)
  • 300hg19
  • 295GRCh38
Lab
  • 331AMP-T2D consortium
  • 164Klaus Kaestner, Upenn
  • 24Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 27audit script error
Audit category:
  • 5missing controlled_by
Audit category:
  • 6inconsistent control run_type
  • 5inconsistent control read length
  • 1inconsistent assembly
target.investigated_as!
  • RNA binding protein
BIOSAMPLE
ASSAY

521 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
primary cell
Langerhans cell6748
pancreatic alpha cell10353
pancreatic beta cell10232
pancreatic acinar cell492
pancreatic ductal cell442
pancreatic cell5
mesenchymal cell2
pancreatic delta cell2
skeletal muscle myoblast11
tissue
islet of Langerhans9720
body of pancreas9422
spleen13112
liver132
subcutaneous adipose tissue101
omental fat pad711
right lobe of liver311
brain1
cell line
HepG245511
GM1287841
in vitro differentiated cells
adipocyte1
white fat cell1
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