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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 130total RNA-seq
  • 99ATAC-seq
  • 85single cell RNA-seq
  • 54ChIP-seq
  • 48snATAC-seq
  • 10DNase-seq
  • 5WGBS
  • 1Hi-C
  • 1pCHi-C
Assay category
  • 215Transcription
  • 157DNA accessibility
  • 54DNA binding
  • 5DNA methylation
  • 13D chromatin structure
Target of assay
  • transcription factor
  • 41control
  • 21RNA binding protein
  • 11chromatin remodeller
  • 10histone modification
  • 9histone
  • 6narrow histone mark
  • 3broad histone mark
  • 3other context
  • 3other post-translational modification
Date released
  • 117May, 2022
  • 109August, 2017
  • 41September, 2018
  • 39February, 2021
  • 25September, 2020
  • 24October, 2018
  • 19November, 2018
  • 9July, 2018
  • 7April, 2018
  • 7August, 2020
  • 7December, 2018
  • 7October, 2017
  • 6November, 2017
  • 5January, 2019
  • 5September, 2017
  • 2August, 2018
  • 2December, 2017
  • 1June, 2018
  • 1March, 2019
Available data
  • 340fastq
  • 264bam
  • 209bigWig
  • 140tsv
  • 94zippedFastqFolder
  • 71bed narrowPeak
  • 39bigBed narrowPeak
  • 12bed broadPeak
  • 10bigBed broadPeak
  • 8bed bed3+
  • 6txt
  • 5bed bedMethyl
  • 5bigBed bedMethyl
  • 2csv
  • 1bedpe bed3+
Organism
  • 433Homo sapiens
Biosample type
  • 234primary cell
  • 180tissue
  • 17cell line
  • 2in vitro differentiated cells
Organ
  • 240pancreas
  • 110epithelium
  • 31liver
  • 22connective tissue
  • 21adipose tissue
  • 11spleen
  • 4blood
  • 4bodily fluid
  • 1brain
Project
  • 269AMP
  • 164HPAP
Genome assembly (visualization)
  • 212hg19
  • 208GRCh38
Lab
  • 243AMP-T2D consortium
  • 164Klaus Kaestner, Upenn
  • 24Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 27audit script error
Audit category:
  • 1missing controlled_by
Audit category:
  • 1inconsistent assembly
  • 1inconsistent control read length
  • 1inconsistent control run_type
target.investigated_as!
  • transcription factor
BIOSAMPLE
ASSAY

433 results

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Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
primary cell
Langerhans cell6748
pancreatic alpha cell10353
pancreatic beta cell10232
pancreatic acinar cell492
pancreatic ductal cell442
tissue
islet of Langerhans9720
liver122
body of pancreas4522
spleen1712
subcutaneous adipose tissue110
cell line
HepG25611
GM128784
in vitro differentiated cells
adipocyte1
white fat cell1
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