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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 628ChIP-seq
  • 107total RNA-seq
  • 99single cell RNA-seq
  • 5GRO-seq
  • 4RRBS
  • 3DNase-seq
  • 3WGBS
  • 2FAIRE-seq
  • 1ATAC-seq
Assay category
  • 628DNA binding
  • 206Transcription
  • 7DNA methylation
  • 6DNA accessibility
Target of assay
  • 311transcription factor
  • 196histone
  • 196histone modification
  • 119control
  • 103broad histone mark
  • 93narrow histone mark
  • 82recombinant protein
  • 64RNA binding protein
  • 23chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 281November, 2017
  • 109August, 2017
  • 90December, 2017
  • 76February, 2023
  • 48November, 2018
  • 40July, 2018
  • 39February, 2018
  • 36April, 2018
  • 35September, 2020
  • 32September, 2018
  • 22October, 2018
  • 17January, 2019
  • 10October, 2017
  • 6September, 2017
  • 5January, 2018
  • 2August, 2018
  • 2December, 2018
  • 2June, 2018
Available data
  • 834fastq
  • 729bam
  • 627bigWig
  • 480bed narrowPeak
  • 381bigBed narrowPeak
  • 95tsv
  • 88bed broadPeak
  • 79bigBed broadPeak
  • 40bed bed3+
  • 39tagAlign
  • 19zippedFastqFolder
  • 6bed bedMethyl
  • 6bigBed bedMethyl
  • 3tar
Organism
  • 845Homo sapiens
Biosample type
  • 324cell line
  • 281primary cell
  • 157tissue
  • 86in vitro differentiated cells
  • 4stem cell
Organ
  • 386liver
  • 257pancreas
  • 181epithelium
  • connective tissue
  • 27embryo
  • 20brain
  • 18adipose tissue
  • 15blood
  • 15bodily fluid
  • 7spleen
  • 6vasculature
  • 3blood vessel
  • 2musculature of body
Project
  • 741AMP
  • 111HPAP
Genome assembly (visualization)
  • 627hg19
  • 573GRCh38
  • 5hg18
Lab
  • 741AMP-T2D consortium
  • 111Klaus Kaestner, Upenn
Audit category:
  • 28inconsistent control
  • 11inconsistent ontology term
Audit category:
  • 66missing controlled_by
Audit category:
  • 43inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
organ_slims!
  • connective tissue
BIOSAMPLE
ASSAY

852 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
GRO-seq
RRBS
DNase-seq
WGBS
FAIRE-seq
ATAC-seq
cell line
HepG2309
GM1287815
primary cell
pancreatic alpha cell134210
exocrine cell39
pancreatic beta cell131110
pancreatic endocrine cell23
pancreatic ductal cell137
tissue
liver5411
islet of Langerhans28611
body of pancreas20
pancreas1621
brain91
in vitro differentiated cells
pancreatic endoderm1841
hepatocyte15
definitive endodermal cell821
primitive gut cell821
Posterior foregut51
stem cell
hESC31
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