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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 624ChIP-seq
  • 54total RNA-seq
  • 46single cell RNA-seq
  • 6WGBS
  • 5GRO-seq
  • 4RRBS
  • 3DNase-seq
  • 2FAIRE-seq
  • 1ATAC-seq
Assay category
  • 624DNA binding
  • 100Transcription
  • 10DNA methylation
  • 6DNA accessibility
Target of assay
  • 341transcription factor
  • 171histone
  • 171histone modification
  • 110control
  • 92broad histone mark
  • 82recombinant protein
  • 78narrow histone mark
  • 64RNA binding protein
  • 24chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 275November, 2017
  • 153August, 2017
  • 71December, 2017
  • 48November, 2018
  • 39February, 2018
  • 39February, 2023
  • 23October, 2018
  • 19September, 2020
  • 17January, 2019
  • 13April, 2018
  • 13July, 2018
  • 11September, 2018
  • 10October, 2017
  • 6September, 2017
  • 5January, 2018
  • 2December, 2018
  • 1June, 2018
Available data
  • 727fastq
  • 674bam
  • 579bigWig
  • 468bed narrowPeak
  • 364bigBed narrowPeak
  • 84bed broadPeak
  • 75bigBed broadPeak
  • 51bed bed3+
  • 42tsv
  • 39tagAlign
  • 19zippedFastqFolder
  • 8bed bedMethyl
  • 8bigBed bedMethyl
  • 3tar
Organism
  • 738Homo sapiens
Biosample type
  • 324cell line
  • 175tissue
  • 122primary cell
  • 120in vitro differentiated cells
  • 4stem cell
Organ
  • 386liver
  • 257pancreas
  • epithelium
  • 74connective tissue
  • 27embryo
  • 20brain
  • 18adipose tissue
  • 15blood
  • 15bodily fluid
  • 7spleen
  • 6vasculature
  • 3blood vessel
  • 2musculature of body
Project
  • 687AMP
  • 58HPAP
Genome assembly (visualization)
  • 578hg19
  • 528GRCh38
  • 5hg18
Lab
  • 687AMP-T2D consortium
  • 58Klaus Kaestner, Upenn
Audit category:
  • 28inconsistent control
  • 6inconsistent ontology term
Audit category:
  • 62missing controlled_by
Audit category:
  • 44inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
organ_slims!
  • epithelium
BIOSAMPLE
ASSAY

745 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
WGBS
GRO-seq
RRBS
DNase-seq
FAIRE-seq
ATAC-seq
cell line
HepG2309
GM1287815
tissue
liver5411
islet of Langerhans28611
body of pancreas20
pancreas1621
white adipose tissue12
primary cell
exocrine cell39
pancreatic endocrine cell23
Langerhans cell19
skeletal muscle myoblast1511
mesenchymal cell4
in vitro differentiated cells
adipocyte53
pancreatic endoderm1841
definitive endodermal cell821
primitive gut cell821
Posterior foregut51
stem cell
hESC31
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