Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 312ChIP-seq
  • 107total RNA-seq
  • 102single cell RNA-seq
  • 5GRO-seq
  • 5WGBS
  • 3DNase-seq
  • 3RRBS
  • 2FAIRE-seq
  • 1ATAC-seq
Assay category
  • 312DNA binding
  • 209Transcription
  • 8DNA methylation
  • 6DNA accessibility
Target of assay
  • 185histone
  • 185histone modification
  • 93broad histone mark
  • 91narrow histone mark
  • 67transcription factor
  • 60control
  • 19RNA binding protein
  • 12chromatin remodeller
Date released
  • 165August, 2017
  • 76February, 2023
  • 42July, 2018
  • 39February, 2018
  • 37April, 2018
  • 35September, 2020
  • 32September, 2018
  • 31December, 2017
  • 23October, 2018
  • 17January, 2019
  • 10October, 2017
  • 9November, 2017
  • 7November, 2018
  • 6September, 2017
  • 5January, 2018
  • 2August, 2018
  • 2December, 2018
  • 2June, 2018
Available data
  • 522fastq
  • 419bam
  • 367bigWig
  • 217bed narrowPeak
  • 98tsv
  • 79bigBed narrowPeak
  • 48bed bed3+
  • 30bed broadPeak
  • 27tagAlign
  • 21bigBed broadPeak
  • 19zippedFastqFolder
  • 7bed bedMethyl
  • 7bigBed bedMethyl
Organism
  • 533Homo sapiens
Biosample type
  • 284primary cell
  • 124in vitro differentiated cells
  • 113tissue
  • 15cell line
  • 4stem cell
Organ
  • liver
  • 257pancreas
  • 181epithelium
  • 74connective tissue
  • 27embryo
  • 20brain
  • 18adipose tissue
  • 15blood
  • 15bodily fluid
  • 7spleen
  • 6vasculature
  • 3blood vessel
  • 2musculature of body
Project
  • 429AMP
  • 111HPAP
Genome assembly (visualization)
  • 368hg19
  • 362GRCh38
  • 5hg18
Lab
  • 429AMP-T2D consortium
  • 111Klaus Kaestner, Upenn
Audit category:
  • 11inconsistent ontology term
  • 1inconsistent control
Audit category:
  • 76missing controlled_by
Audit category:
  • 29inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
organ_slims!
  • liver
BIOSAMPLE
ASSAY

540 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
GRO-seq
WGBS
DNase-seq
RRBS
FAIRE-seq
ATAC-seq
primary cell
pancreatic alpha cell134210
exocrine cell39
pancreatic beta cell131110
pancreatic endocrine cell23
pancreatic ductal cell137
in vitro differentiated cells
adipocyte53
pancreatic endoderm1841
definitive endodermal cell821
primitive gut cell821
Posterior foregut51
tissue
islet of Langerhans28611
body of pancreas20
pancreas1621
white adipose tissue12
brain91
cell line
GM1287815
stem cell
hESC31
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego