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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 562ChIP-seq
  • 54total RNA-seq
  • 37single cell RNA-seq
  • 5GRO-seq
  • 4RRBS
  • 4WGBS
  • 2DNase-seq
  • 1ATAC-seq
Assay category
  • 562DNA binding
  • 91Transcription
  • 8DNA methylation
  • 3DNA accessibility
Target of assay
  • 336transcription factor
  • 122histone
  • 122histone modification
  • 102control
  • 82recombinant protein
  • 64RNA binding protein
  • 63broad histone mark
  • 58narrow histone mark
  • 25chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 281November, 2017
  • 103August, 2017
  • 90December, 2017
  • 45November, 2018
  • 39February, 2018
  • 39February, 2023
  • 19September, 2020
  • 17January, 2019
  • 10October, 2017
  • 9July, 2018
  • 8April, 2018
  • 5January, 2018
  • 2December, 2018
  • 1June, 2018
  • 1October, 2018
Available data
  • 651fastq
  • 598bam
  • 513bigWig
  • 432bed narrowPeak
  • 349bigBed narrowPeak
  • 82bed broadPeak
  • 79bigBed broadPeak
  • 33tsv
  • 32tagAlign
  • 30bed bed3+
  • 19zippedFastqFolder
  • 6bed bedMethyl
  • 6bigBed bedMethyl
  • 3tar
Organism
  • 669Homo sapiens
Biosample type
  • 324cell line
  • 139in vitro differentiated cells
  • 102primary cell
  • 100tissue
  • 4stem cell
Organ
  • 386liver
  • pancreas
  • 181epithelium
  • 74connective tissue
  • 27embryo
  • 20brain
  • 18adipose tissue
  • 15blood
  • 15bodily fluid
  • 7spleen
  • 6vasculature
  • 3blood vessel
  • 2musculature of body
Project
  • 611AMP
  • 58HPAP
Genome assembly (visualization)
  • 512hg19
  • 460GRCh38
  • 5hg18
Lab
  • 611AMP-T2D consortium
  • 58Klaus Kaestner, Upenn
Audit category:
  • 28inconsistent control
  • 6inconsistent ontology term
Audit category:
  • 29missing controlled_by
Audit category:
  • 40inconsistent control read length
  • 2inconsistent assembly
  • 1inconsistent control run_type
organ_slims!
  • pancreas
BIOSAMPLE
ASSAY

669 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
GRO-seq
RRBS
WGBS
DNase-seq
ATAC-seq
cell line
HepG2309
GM1287815
in vitro differentiated cells
adipocyte53
pancreatic endoderm1841
hepatocyte15
definitive endodermal cell821
primitive gut cell821
primary cell
exocrine cell39
Langerhans cell19
skeletal muscle myoblast1511
mesenchymal cell4
pancreatic cell4
tissue
liver5411
white adipose tissue12
brain91
spleen7
right lobe of liver6
stem cell
hESC31
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