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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 68ChIP-seq
  • 3WGBS
  • 3single cell RNA-seq
Assay category
  • 68DNA binding
  • 3DNA methylation
  • 3Transcription
Target of assay
  • 34transcription factor
  • 26histone
  • 26histone modification
  • 13narrow histone mark
  • 12broad histone mark
  • 8control
  • 4RNA binding protein
  • 2chromatin remodeller
Date released
  • 70August, 2017
  • 2July, 2018
  • 1April, 2018
  • 1October, 2018
Available data
  • 74fastq
  • 73bam
  • 65bigWig
  • 43bed narrowPeak
  • 11bed bed3+
  • 3tsv
  • 2bed bedMethyl
  • 2bigBed bedMethyl
  • 1bigBed narrowPeak
Organism
  • 74Homo sapiens
Biosample type
  • 53in vitro differentiated cells
  • 18tissue
  • 3primary cell
Organ
  • 386liver
  • 257pancreas
  • 181epithelium
  • 74connective tissue
  • 27embryo
  • 20brain
  • 18adipose tissue
  • 15blood
  • 15bodily fluid
  • 7spleen
  • 6vasculature
  • 3blood vessel
  • 2musculature of body
Project
  • 74AMP
Genome assembly (visualization)
  • 66GRCh38
  • 64hg19
Lab
  • 74AMP-T2D consortium
Audit category:
  • 17missing controlled_by
Audit category:
  • 6inconsistent control read length
BIOSAMPLE
ASSAY

74 results

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ChIP-seq
WGBS
single cell RNA-seq
in vitro differentiated cells
adipocyte53
tissue
white adipose tissue12
adipose tissue23
omental fat pad1
primary cell
pancreatic stellate cell3
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