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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
72
ChIP-seq
56
single cell RNA-seq
53
total RNA-seq
Assay category
109
Transcription
72
DNA binding
Target of assay
51
histone
51
histone modification
28
narrow histone mark
23
broad histone mark
17
control
4
RNA binding protein
4
transcription factor
1
chromatin remodeller
Date released
37
February, 2023
29
July, 2018
26
August, 2017
24
April, 2018
21
September, 2018
19
December, 2017
16
September, 2020
6
November, 2017
2
August, 2018
1
June, 2018
Available data
181
fastq
128
bam
113
bigWig
56
tsv
55
bed narrowPeak
18
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
Organism
181
Homo sapiens
Biosample type
162
primary cell
19
in vitro differentiated cells
Organ
386
liver
257
pancreas
181
epithelium
74
connective tissue
27
embryo
20
brain
18
adipose tissue
15
blood
15
bodily fluid
7
spleen
6
vasculature
3
blood vessel
2
musculature of body
Project
128
AMP
53
HPAP
Genome assembly (visualization)
113
hg19
111
GRCh38
Lab
128
AMP-T2D consortium
53
Klaus Kaestner, Upenn
Audit category:
5
inconsistent ontology term
Audit category:
21
missing controlled_by
Audit category:
5
inconsistent control read length
BIOSAMPLE
ASSAY
181 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
primary cell
pancreatic alpha cell
13
10
42
pancreatic beta cell
13
10
11
pancreatic ductal cell
13
7
pancreatic acinar cell
8
7
pancreatic delta cell
9
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in vitro differentiated cells
hepatocyte
15
Hepatic endoderm
4
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