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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 72ChIP-seq
  • 56single cell RNA-seq
  • 53total RNA-seq
Assay category
  • 109Transcription
  • 72DNA binding
Target of assay
  • 51histone
  • 51histone modification
  • 28narrow histone mark
  • 23broad histone mark
  • 17control
  • 4RNA binding protein
  • 4transcription factor
  • 1chromatin remodeller
Date released
  • 37February, 2023
  • 29July, 2018
  • 26August, 2017
  • 24April, 2018
  • 21September, 2018
  • 19December, 2017
  • 16September, 2020
  • 6November, 2017
  • 2August, 2018
  • 1June, 2018
Available data
  • 181fastq
  • 128bam
  • 113bigWig
  • 56tsv
  • 55bed narrowPeak
  • 18bigBed narrowPeak
  • 4bed broadPeak
  • 4bigBed broadPeak
Organism
  • 181Homo sapiens
Biosample type
  • 162primary cell
  • 19in vitro differentiated cells
Organ
  • 386liver
  • 257pancreas
  • 181epithelium
  • 74connective tissue
  • 27embryo
  • 20brain
  • 18adipose tissue
  • 15blood
  • 15bodily fluid
  • 7spleen
  • 6vasculature
  • 3blood vessel
  • 2musculature of body
Project
  • 128AMP
  • 53HPAP
Genome assembly (visualization)
  • 113hg19
  • 111GRCh38
Lab
  • 128AMP-T2D consortium
  • 53Klaus Kaestner, Upenn
Audit category:
  • 5inconsistent ontology term
Audit category:
  • 21missing controlled_by
Audit category:
  • 5inconsistent control read length
BIOSAMPLE
ASSAY

181 results

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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
primary cell
pancreatic alpha cell131042
pancreatic beta cell131011
pancreatic ductal cell137
pancreatic acinar cell87
pancreatic delta cell9
in vitro differentiated cells
hepatocyte15
Hepatic endoderm4
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