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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
134
ChIP-seq
65
single cell RNA-seq
53
total RNA-seq
2
FAIRE-seq
2
WGBS
1
DNase-seq
Assay category
134
DNA binding
118
Transcription
3
DNA accessibility
2
DNA methylation
Target of assay
100
histone
100
histone modification
52
broad histone mark
48
narrow histone mark
25
control
9
transcription factor
4
RNA binding protein
Date released
76
August, 2017
37
February, 2023
33
July, 2018
32
September, 2018
29
April, 2018
22
October, 2018
16
September, 2020
6
September, 2017
3
November, 2018
2
August, 2018
1
June, 2018
Available data
257
fastq
204
bam
179
bigWig
91
bed narrowPeak
65
tsv
33
bigBed narrowPeak
21
bed bed3+
7
tagAlign
6
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
Organism
250
Homo sapiens
Biosample type
182
primary cell
75
tissue
Organ
386
liver
257
pancreas
181
epithelium
74
connective tissue
27
embryo
20
brain
18
adipose tissue
15
blood
15
bodily fluid
7
spleen
6
vasculature
3
blood vessel
2
musculature of body
Project
204
AMP
53
HPAP
Genome assembly (visualization)
179
GRCh38
179
hg19
Lab
204
AMP-T2D consortium
53
Klaus Kaestner, Upenn
Audit category:
5
inconsistent ontology term
Audit category:
54
missing controlled_by
Audit category:
9
inconsistent control read length
1
inconsistent assembly
BIOSAMPLE
ASSAY
257 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
FAIRE-seq
WGBS
DNase-seq
primary cell
pancreatic alpha cell
13
10
42
pancreatic beta cell
13
10
11
pancreatic endocrine cell
23
pancreatic ductal cell
13
7
pancreatic acinar cell
8
7
+ See 5 more…
tissue
islet of Langerhans
28
6
1
1
body of pancreas
20
pancreas
16
1
2
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