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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 658ChIP-seq
  • 106total RNA-seq
  • 34single cell RNA-seq
  • 6WGBS
  • 5GRO-seq
  • 4RRBS
  • 2DNase-seq
  • 1ATAC-seq
  • 1FAIRE-seq
Assay category
  • 658DNA binding
  • 140Transcription
  • 10DNA methylation
  • 4DNA accessibility
Target of assay
  • 324transcription factor
  • 210histone
  • 210histone modification
  • 122control
  • 109broad histone mark
  • 100narrow histone mark
  • 82recombinant protein
  • 65RNA binding protein
  • 25chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 281November, 2017
  • 146August, 2017
  • 87December, 2017
  • 76February, 2023
  • 47November, 2018
  • 38February, 2018
  • 35September, 2020
  • 32September, 2018
  • 22October, 2018
  • 17January, 2019
  • 10October, 2017
  • 8April, 2018
  • 5January, 2018
  • 5July, 2018
  • 4September, 2017
  • 2December, 2018
  • 2June, 2018
Available data
  • 799fastq
  • 693bam
  • 588bigWig
  • 501bed narrowPeak
  • 377bigBed narrowPeak
  • 88bed broadPeak
  • 79bigBed broadPeak
  • 39tagAlign
  • 29tsv
  • 19zippedFastqFolder
  • 17bed bed3+
  • 8bed bedMethyl
  • 8bigBed bedMethyl
  • 3tar
Organism
  • 810Homo sapiens
Biosample type
  • 324cell line
  • 222primary cell
  • 136tissue
  • 131in vitro differentiated cells
  • 4stem cell
Organ
  • 380liver
  • 177pancreas
  • 133epithelium
  • 60connective tissue
  • 27embryo
  • 20brain
  • 15blood
  • 15bodily fluid
  • 14adipose tissue
  • 7spleen
  • 6vasculature
  • 3blood vessel
  • 2musculature of body
Project
  • 706AMP
  • 111HPAP
Genome assembly (visualization)
  • 583hg19
  • 532GRCh38
  • 5hg18
Lab
  • 706AMP-T2D consortium
  • 111Klaus Kaestner, Upenn
Audit category:
  • 28inconsistent control
  • 7inconsistent ontology term
Audit category:
  • 69missing controlled_by
Audit category:
  • 45inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
replication_type!
  • anisogenic
BIOSAMPLE
ASSAY

817 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
WGBS
GRO-seq
RRBS
DNase-seq
ATAC-seq
FAIRE-seq
cell line
HepG2309
GM1287815
primary cell
pancreatic alpha cell13421
exocrine cell39
pancreatic beta cell13111
pancreatic endocrine cell23
Langerhans cell19
tissue
liver4811
body of pancreas20
pancreas152
brain91
islet of Langerhans81
in vitro differentiated cells
adipocyte46
pancreatic endoderm1841
hepatocyte15
definitive endodermal cell821
primitive gut cell821
stem cell
hESC31
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