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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 311ChIP-seq
  • 107total RNA-seq
  • 102single cell RNA-seq
  • 6WGBS
  • 5GRO-seq
  • 2DNase-seq
  • 2FAIRE-seq
  • 1ATAC-seq
Assay category
  • 311DNA binding
  • 209Transcription
  • 6DNA methylation
  • 5DNA accessibility
Target of assay
  • 160histone
  • 160histone modification
  • 91control
  • 85broad histone mark
  • 74narrow histone mark
  • 60transcription factor
  • 10RNA binding protein
  • 4chromatin remodeller
  • 1recombinant protein
Date released
  • 158August, 2017
  • 76February, 2023
  • 42July, 2018
  • 39February, 2018
  • 37April, 2018
  • 35September, 2020
  • 32September, 2018
  • 31December, 2017
  • 29November, 2017
  • 16October, 2018
  • 10October, 2017
  • 9January, 2019
  • 7November, 2018
  • 6September, 2017
  • 5January, 2018
  • 2August, 2018
  • 2June, 2018
Available data
  • 518fastq
  • 417bam
  • 336bigWig
  • 183bed narrowPeak
  • 98tsv
  • 52bigBed narrowPeak
  • 36bed bed3+
  • 19zippedFastqFolder
  • 15tagAlign
  • 10bed broadPeak
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 1bigBed broadPeak
Organism
  • 529Homo sapiens
Biosample type
  • 260primary cell
  • 132tissue
  • 112in vitro differentiated cells
  • 31cell line
  • 1stem cell
Organ
  • 249pancreas
  • 161epithelium
  • 74connective tissue
  • 55liver
  • 24embryo
  • 18adipose tissue
  • 14brain
  • 7spleen
  • 4blood
  • 4bodily fluid
  • 2vasculature
  • 1blood vessel
Project
  • 425AMP
  • 111HPAP
Genome assembly (visualization)
  • 330hg19
  • 326GRCh38
  • 5hg18
Lab
  • 425AMP-T2D consortium
  • 111Klaus Kaestner, Upenn
Audit category:
  • 11inconsistent ontology term
Audit category:
  • 77missing controlled_by
Audit category:
  • 22inconsistent control read length
  • 1inconsistent assembly
replication_type!
  • isogenic
BIOSAMPLE
ASSAY

536 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
WGBS
GRO-seq
DNase-seq
FAIRE-seq
ATAC-seq
primary cell
pancreatic alpha cell134210
exocrine cell39
pancreatic beta cell121110
pancreatic endocrine cell23
pancreatic ductal cell137
tissue
islet of Langerhans28611
liver231
pancreas1621
body of pancreas13
white adipose tissue12
in vitro differentiated cells
adipocyte53
pancreatic endoderm1541
definitive endodermal cell521
primitive gut cell521
embryonic stem cell32
cell line
HepG227
GM128784
stem cell
hESC1
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