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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 423ChIP-seq
  • 68single cell RNA-seq
  • 4RRBS
  • 2DNase-seq
  • 1FAIRE-seq
  • 1total RNA-seq
Assay category
  • 423DNA binding
  • 69Transcription
  • 4DNA methylation
  • 3DNA accessibility
Target of assay
  • 306transcription factor
  • 81recombinant protein
  • 74histone
  • 74histone modification
  • 61RNA binding protein
  • 41control
  • 38narrow histone mark
  • 36broad histone mark
  • 21chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 252November, 2017
  • 62December, 2017
  • 54August, 2017
  • 42November, 2018
  • 37July, 2018
  • 29April, 2018
  • 8January, 2019
  • 8October, 2018
  • 2August, 2018
  • 2December, 2018
  • 2September, 2017
  • 1February, 2018
Available data
  • 499fastq
  • 494bam
  • 460bigWig
  • 362bed narrowPeak
  • 335bigBed narrowPeak
  • 78bed broadPeak
  • 78bigBed broadPeak
  • 69tsv
  • 49bed bed3+
  • 24tagAlign
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 3tar
Organism
  • 499Homo sapiens
Biosample type
  • 293cell line
  • 86primary cell
  • 82tissue
  • 35in vitro differentiated cells
  • 3stem cell
Organ
  • 337liver
  • 88pancreas
  • 68epithelium
  • 14connective tissue
  • 11blood
  • 11bodily fluid
  • 6brain
  • 4adipose tissue
  • 4vasculature
  • 3embryo
  • 2blood vessel
  • 2musculature of body
Project
  • 499AMP
Genome assembly (visualization)
  • 469hg19
  • 420GRCh38
Lab
  • 499AMP-T2D consortium
Audit category:
  • 28inconsistent control
  • 4inconsistent ontology term
Audit category:
  • 20missing controlled_by
Audit category:
  • 31inconsistent control read length
  • 2inconsistent assembly
  • 1inconsistent control run_type
replication_type!
  • unreplicated
BIOSAMPLE
ASSAY

499 results

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Clear Filters
ChIP-seq
single cell RNA-seq
RRBS
DNase-seq
FAIRE-seq
total RNA-seq
cell line
HepG2282
GM1287811
primary cell
skeletal muscle myoblast1511
pancreatic beta cell19
pancreatic alpha cell9
pancreatic delta cell8
pancreatic polypeptide-secreting cell7
tissue
liver371
islet of Langerhans2061
body of pancreas7
white adipose tissue4
pancreas11
in vitro differentiated cells
hepatocyte15
adipocyte7
Posterior foregut3
definitive endodermal cell3
pancreatic endoderm3
stem cell
hESC3
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