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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
68
single cell RNA-seq
38
ChIP-seq
1
DNase-seq
1
FAIRE-seq
1
total RNA-seq
Assay category
69
Transcription
38
DNA binding
2
DNA accessibility
Target of assay
21
transcription factor
12
histone
12
histone modification
6
broad histone mark
6
narrow histone mark
5
control
3
RNA binding protein
Date released
37
July, 2018
33
August, 2017
29
April, 2018
3
December, 2017
2
August, 2018
2
September, 2017
1
February, 2018
1
November, 2018
1
October, 2018
Available data
109
bam
109
fastq
104
bigWig
69
tsv
34
bed bed3+
22
bed narrowPeak
5
bigBed narrowPeak
Organism
109
Homo sapiens
Biosample type
62
primary cell
39
tissue
8
in vitro differentiated cells
Organ
80
pancreas
48
epithelium
14
connective tissue
6
liver
4
adipose tissue
Project
109
AMP
Genome assembly (visualization)
108
hg19
107
GRCh38
Lab
109
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
14
missing controlled_by
Audit category:
4
inconsistent control read length
BIOSAMPLE
ASSAY
109 results
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single cell RNA-seq
ChIP-seq
DNase-seq
FAIRE-seq
total RNA-seq
primary cell
pancreatic alpha cell
9
pancreatic beta cell
9
pancreatic delta cell
8
pancreatic polypeptide-secreting cell
7
pancreatic ductal cell
6
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tissue
islet of Langerhans
6
20
1
liver
6
white adipose tissue
4
pancreas
1
1
in vitro differentiated cells
adipocyte
7
islet precursor cell
1
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