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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 385ChIP-seq
  • 4RRBS
  • 1DNase-seq
Assay category
  • 385DNA binding
  • 4DNA methylation
  • 1DNA accessibility
Target of assay
  • 285transcription factor
  • 81recombinant protein
  • 62histone
  • 62histone modification
  • 58RNA binding protein
  • 36control
  • 32narrow histone mark
  • 30broad histone mark
  • 21chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 252November, 2017
  • 59December, 2017
  • 41November, 2018
  • 21August, 2017
  • 8January, 2019
  • 7October, 2018
  • 2December, 2018
Available data
  • 390fastq
  • 385bam
  • 356bigWig
  • 340bed narrowPeak
  • 330bigBed narrowPeak
  • 78bed broadPeak
  • 78bigBed broadPeak
  • 24tagAlign
  • 15bed bed3+
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 3tar
Organism
  • 390Homo sapiens
Biosample type
  • 293cell line
  • 43tissue
  • 27in vitro differentiated cells
  • 24primary cell
  • 3stem cell
Organ
  • 331liver
  • 20epithelium
  • 11blood
  • 11bodily fluid
  • 8pancreas
  • 6brain
  • 4vasculature
  • 3embryo
  • 2blood vessel
  • 2musculature of body
Project
  • 390AMP
Genome assembly (visualization)
  • 361hg19
  • 313GRCh38
Lab
  • 390AMP-T2D consortium
Audit category:
  • 28inconsistent control
Audit category:
  • 6missing controlled_by
Audit category:
  • 27inconsistent control read length
  • 2inconsistent assembly
  • 1inconsistent control run_type
BIOSAMPLE
ASSAY

390 results

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Clear Filters
ChIP-seq
RRBS
DNase-seq
cell line
HepG2282
GM1287811
tissue
liver311
body of pancreas7
right lobe of liver2
skeletal muscle tissue2
in vitro differentiated cells
hepatocyte15
Posterior foregut3
definitive endodermal cell3
pancreatic endoderm3
primitive gut cell3
primary cell
skeletal muscle myoblast1511
astrocyte of the cerebellum2
brain microvascular endothelial cell2
choroid plexus epithelial cell2
pancreatic beta cell1
stem cell
hESC3
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