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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 273ChIP-seq
  • 106total RNA-seq
  • 34single cell RNA-seq
  • 6WGBS
  • 5GRO-seq
  • 1ATAC-seq
  • 1DNase-seq
  • 1FAIRE-seq
Assay category
  • 273DNA binding
  • 140Transcription
  • 6DNA methylation
  • 3DNA accessibility
Target of assay
  • 148histone
  • 148histone modification
  • 86control
  • 79broad histone mark
  • 68narrow histone mark
  • 39transcription factor
  • 7RNA binding protein
  • 4chromatin remodeller
  • 1recombinant protein
Date released
  • 125August, 2017
  • 76February, 2023
  • 38February, 2018
  • 35September, 2020
  • 32September, 2018
  • 29November, 2017
  • 28December, 2017
  • 15October, 2018
  • 10October, 2017
  • 9January, 2019
  • 8April, 2018
  • 6November, 2018
  • 5January, 2018
  • 5July, 2018
  • 4September, 2017
  • 2June, 2018
Available data
  • 409fastq
  • 308bam
  • 232bigWig
  • 161bed narrowPeak
  • 47bigBed narrowPeak
  • 29tsv
  • 19zippedFastqFolder
  • 15tagAlign
  • 10bed broadPeak
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 2bed bed3+
  • 1bigBed broadPeak
Organism
  • 420Homo sapiens
Biosample type
  • 198primary cell
  • 104in vitro differentiated cells
  • 93tissue
  • 31cell line
  • 1stem cell
Organ
  • 169pancreas
  • 113epithelium
  • 60connective tissue
  • 49liver
  • 24embryo
  • 14adipose tissue
  • 14brain
  • 7spleen
  • 4blood
  • 4bodily fluid
  • 2vasculature
  • 1blood vessel
Project
  • 316AMP
  • 111HPAP
Genome assembly (visualization)
  • 222hg19
  • 219GRCh38
  • 5hg18
Lab
  • 316AMP-T2D consortium
  • 111Klaus Kaestner, Upenn
Audit category:
  • 7inconsistent ontology term
Audit category:
  • 63missing controlled_by
Audit category:
  • 18inconsistent control read length
  • 1inconsistent assembly
BIOSAMPLE
ASSAY

427 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
WGBS
GRO-seq
ATAC-seq
DNase-seq
FAIRE-seq
primary cell
pancreatic alpha cell13421
exocrine cell39
pancreatic beta cell12111
pancreatic endocrine cell23
Langerhans cell19
in vitro differentiated cells
adipocyte46
pancreatic endoderm1541
definitive endodermal cell521
primitive gut cell521
embryonic stem cell32
tissue
liver171
pancreas152
body of pancreas13
brain91
islet of Langerhans81
cell line
HepG227
GM128784
stem cell
hESC1
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