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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 581ChIP-seq
  • 107total RNA-seq
  • 102single cell RNA-seq
  • 6WGBS
  • 5GRO-seq
  • 4RRBS
  • 3DNase-seq
  • 2FAIRE-seq
  • 1ATAC-seq
Assay category
  • 581DNA binding
  • 209Transcription
  • 10DNA methylation
  • 6DNA accessibility
Target of assay
  • 345transcription factor
  • 222histone
  • 222histone modification
  • 127control
  • broad histone mark
  • 106narrow histone mark
  • 82recombinant protein
  • 68RNA binding protein
  • 25chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 273November, 2017
  • 133August, 2017
  • 76February, 2023
  • 75December, 2017
  • 48November, 2018
  • 42July, 2018
  • 37April, 2018
  • 35September, 2020
  • 31February, 2018
  • 15September, 2018
  • 13January, 2019
  • 12October, 2018
  • 6September, 2017
  • 5January, 2018
  • 4October, 2017
  • 2August, 2018
  • 2December, 2018
  • 2June, 2018
Available data
  • 793fastq
  • 688bam
  • 578bigWig
  • 415bed narrowPeak
  • 327bigBed narrowPeak
  • 98tsv
  • 68bed broadPeak
  • 65bigBed broadPeak
  • 40bed bed3+
  • 19zippedFastqFolder
  • 17tagAlign
  • 8bed bedMethyl
  • 8bigBed bedMethyl
  • 3tar
Organism
  • 808Homo sapiens
Biosample type
  • 316cell line
  • 251primary cell
  • 133tissue
  • 108in vitro differentiated cells
  • 3stem cell
Organ
  • 364liver
  • 205pancreas
  • 158epithelium
  • 62connective tissue
  • 23embryo
  • 18adipose tissue
  • 15blood
  • 15bodily fluid
  • 14brain
  • 6vasculature
  • 3blood vessel
  • 3spleen
  • 2musculature of body
Project
  • 700AMP
  • 111HPAP
Genome assembly (visualization)
  • 577hg19
  • 526GRCh38
  • 5hg18
Lab
  • 700AMP-T2D consortium
  • 111Klaus Kaestner, Upenn
Audit category:
  • 28inconsistent control
  • 11inconsistent ontology term
Audit category:
  • 58missing controlled_by
Audit category:
  • 34inconsistent control read length
  • 1inconsistent assembly
  • 1inconsistent control run_type
target.investigated_as!
  • broad histone mark
BIOSAMPLE
ASSAY

811 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
WGBS
GRO-seq
RRBS
DNase-seq
FAIRE-seq
ATAC-seq
cell line
HepG2301
GM1287815
primary cell
pancreatic alpha cell104210
exocrine cell39
pancreatic beta cell101110
Langerhans cell19
pancreatic ductal cell77
tissue
liver5011
islet of Langerhans22611
white adipose tissue12
pancreas821
body of pancreas9
in vitro differentiated cells
adipocyte41
pancreatic endoderm1441
definitive endodermal cell621
primitive gut cell621
hepatocyte8
stem cell
hESC21
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