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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 569ChIP-seq
  • 107total RNA-seq
  • 102single cell RNA-seq
  • 6WGBS
  • 5GRO-seq
  • 4RRBS
  • 3DNase-seq
  • 2FAIRE-seq
  • 1ATAC-seq
Assay category
  • 569DNA binding
  • 209Transcription
  • 10DNA methylation
  • 6DNA accessibility
Target of assay
  • 345transcription factor
  • 222histone
  • 222histone modification
  • control
  • 115broad histone mark
  • 106narrow histone mark
  • 82recombinant protein
  • 68RNA binding protein
  • 25chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 226November, 2017
  • 152August, 2017
  • 76February, 2023
  • 71December, 2017
  • 47November, 2018
  • 42July, 2018
  • 37April, 2018
  • 35September, 2020
  • 32September, 2018
  • 31February, 2018
  • 18October, 2018
  • 13January, 2019
  • 8October, 2017
  • 5January, 2018
  • 2August, 2018
  • 2December, 2018
  • 2June, 2018
Available data
  • 781fastq
  • 675bam
  • 675bigWig
  • 523bed narrowPeak
  • 382bigBed narrowPeak
  • 98tsv
  • 88bed broadPeak
  • 79bigBed broadPeak
  • 42bed bed3+
  • 35tagAlign
  • 19zippedFastqFolder
  • 8bed bedMethyl
  • 8bigBed bedMethyl
  • 3tar
Organism
  • 793Homo sapiens
Biosample type
  • 268cell line
  • 268primary cell
  • 143tissue
  • 117in vitro differentiated cells
  • 3stem cell
Organ
  • 319liver
  • 232pancreas
  • 164epithelium
  • 66connective tissue
  • 20embryo
  • 16adipose tissue
  • 15brain
  • 11blood
  • 11bodily fluid
  • 6spleen
  • 4vasculature
  • 2blood vessel
  • 2musculature of body
Project
  • 688AMP
  • 111HPAP
Genome assembly (visualization)
  • 665hg19
  • 630GRCh38
  • 5hg18
Lab
  • 688AMP-T2D consortium
  • 111Klaus Kaestner, Upenn
Audit category:
  • 28inconsistent control
  • 9inconsistent ontology term
Audit category:
  • 83missing controlled_by
Audit category:
  • 49inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
target.investigated_as!
  • control
BIOSAMPLE
ASSAY

799 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
WGBS
GRO-seq
RRBS
DNase-seq
FAIRE-seq
ATAC-seq
cell line
HepG2257
GM1287811
primary cell
pancreatic alpha cell74210
exocrine cell39
pancreatic beta cell71110
pancreatic endocrine cell23
pancreatic ductal cell137
tissue
liver4111
islet of Langerhans21611
body of pancreas17
pancreas1321
white adipose tissue12
in vitro differentiated cells
adipocyte47
pancreatic endoderm1341
hepatocyte14
definitive endodermal cell621
primitive gut cell621
stem cell
hESC21
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