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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 474ChIP-seq
  • 107total RNA-seq
  • 102single cell RNA-seq
  • 6WGBS
  • 5GRO-seq
  • 4RRBS
  • 3DNase-seq
  • 2FAIRE-seq
  • 1ATAC-seq
Assay category
  • 474DNA binding
  • 209Transcription
  • 10DNA methylation
  • 6DNA accessibility
Target of assay
  • 345transcription factor
  • 222histone
  • histone modification
  • 127control
  • 115broad histone mark
  • 106narrow histone mark
  • 82recombinant protein
  • 68RNA binding protein
  • 25chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 263November, 2017
  • 84August, 2017
  • 76February, 2023
  • 59December, 2017
  • 48November, 2018
  • 42July, 2018
  • 37April, 2018
  • 35September, 2020
  • 23February, 2018
  • 10January, 2019
  • 7October, 2018
  • 6September, 2017
  • 5January, 2018
  • 3October, 2017
  • 2August, 2018
  • 2December, 2018
  • 2June, 2018
Available data
  • 686fastq
  • 581bam
  • 472bigWig
  • 320bed narrowPeak
  • 290bigBed narrowPeak
  • 98tsv
  • 51bed broadPeak
  • 51bigBed broadPeak
  • 29bed bed3+
  • 19zippedFastqFolder
  • 8bed bedMethyl
  • 8bigBed bedMethyl
  • 4tagAlign
  • 3tar
Organism
  • 703Homo sapiens
Biosample type
  • 308cell line
  • 211primary cell
  • 109tissue
  • 74in vitro differentiated cells
  • 2stem cell
Organ
  • 349liver
  • 157pancreas
  • 130epithelium
  • 48connective tissue
  • 17adipose tissue
  • 15embryo
  • 14blood
  • 14bodily fluid
  • 10brain
  • 4vasculature
  • 2blood vessel
  • 2musculature of body
  • 1spleen
Project
  • 593AMP
  • 111HPAP
Genome assembly (visualization)
  • 471hg19
  • 421GRCh38
  • 5hg18
Lab
  • 593AMP-T2D consortium
  • 111Klaus Kaestner, Upenn
Audit category:
  • 28inconsistent control
  • 9inconsistent ontology term
Audit category:
  • 29missing controlled_by
Audit category:
  • 18inconsistent control read length
target.investigated_as!
  • histone modification
BIOSAMPLE
ASSAY

704 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
WGBS
GRO-seq
RRBS
DNase-seq
FAIRE-seq
ATAC-seq
cell line
HepG2294
GM1287814
primary cell
pancreatic alpha cell64210
exocrine cell39
pancreatic beta cell61110
Langerhans cell19
pancreatic delta cell9
tissue
liver4911
islet of Langerhans14611
white adipose tissue12
pancreas421
adipose tissue13
in vitro differentiated cells
adipocyte28
pancreatic endoderm841
definitive endodermal cell421
primitive gut cell421
Posterior foregut31
stem cell
hESC11
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