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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 590ChIP-seq
  • 107total RNA-seq
  • 102single cell RNA-seq
  • 6WGBS
  • 5GRO-seq
  • 4RRBS
  • 3DNase-seq
  • 2FAIRE-seq
  • 1ATAC-seq
Assay category
  • 590DNA binding
  • 209Transcription
  • 10DNA methylation
  • 6DNA accessibility
Target of assay
  • 345transcription factor
  • 222histone
  • 222histone modification
  • 127control
  • 115broad histone mark
  • narrow histone mark
  • 82recombinant protein
  • 68RNA binding protein
  • 25chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 271November, 2017
  • 131August, 2017
  • 76February, 2023
  • 74December, 2017
  • 48November, 2018
  • 42July, 2018
  • 37April, 2018
  • 35September, 2020
  • 31February, 2018
  • 18October, 2018
  • 17September, 2018
  • 14January, 2019
  • 9October, 2017
  • 6September, 2017
  • 5January, 2018
  • 2August, 2018
  • 2December, 2018
  • 2June, 2018
Available data
  • 802fastq
  • 696bam
  • 587bigWig
  • 429bed narrowPeak
  • 345bigBed narrowPeak
  • 98tsv
  • 71bed broadPeak
  • 65bigBed broadPeak
  • 40bed bed3+
  • 26tagAlign
  • 19zippedFastqFolder
  • 8bed bedMethyl
  • 8bigBed bedMethyl
  • 3tar
Organism
  • 815Homo sapiens
Biosample type
  • 316cell line
  • 244primary cell
  • 151tissue
  • 106in vitro differentiated cells
  • 3stem cell
Organ
  • 371liver
  • 209pancreas
  • 153epithelium
  • 61connective tissue
  • 19embryo
  • 17adipose tissue
  • 16brain
  • 14blood
  • 14bodily fluid
  • 5spleen
  • 4vasculature
  • 2blood vessel
  • 2musculature of body
Project
  • 709AMP
  • 111HPAP
Genome assembly (visualization)
  • 586hg19
  • 535GRCh38
  • 5hg18
Lab
  • 709AMP-T2D consortium
  • 111Klaus Kaestner, Upenn
Audit category:
  • 28inconsistent control
  • 9inconsistent ontology term
Audit category:
  • 54missing controlled_by
Audit category:
  • 33inconsistent control read length
  • 2inconsistent assembly
target.investigated_as!
  • narrow histone mark
BIOSAMPLE
ASSAY

820 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
WGBS
GRO-seq
RRBS
DNase-seq
FAIRE-seq
ATAC-seq
cell line
HepG2302
GM1287814
primary cell
pancreatic alpha cell94210
exocrine cell39
pancreatic beta cell91110
Langerhans cell19
pancreatic ductal cell67
tissue
liver5311
islet of Langerhans20611
body of pancreas15
pancreas1221
white adipose tissue12
in vitro differentiated cells
adipocyte41
pancreatic endoderm1241
hepatocyte10
definitive endodermal cell621
primitive gut cell621
stem cell
hESC21
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