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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 351ChIP-seq
  • 107total RNA-seq
  • 102single cell RNA-seq
  • 6WGBS
  • 5GRO-seq
  • 4RRBS
  • 3DNase-seq
  • 2FAIRE-seq
  • 1ATAC-seq
Assay category
  • 351DNA binding
  • 209Transcription
  • 10DNA methylation
  • 6DNA accessibility
Target of assay
  • transcription factor
  • 222histone
  • 222histone modification
  • 127control
  • 115broad histone mark
  • 106narrow histone mark
  • 82recombinant protein
  • 68RNA binding protein
  • 25chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 133August, 2017
  • 76February, 2023
  • 75November, 2017
  • 50December, 2017
  • 42July, 2018
  • 39February, 2018
  • 37April, 2018
  • 35September, 2020
  • 32September, 2018
  • 21October, 2018
  • 11January, 2019
  • 10October, 2017
  • 6September, 2017
  • 5January, 2018
  • 5November, 2018
  • 2August, 2018
  • 2June, 2018
Available data
  • 563fastq
  • 458bam
  • 352bigWig
  • 210bed narrowPeak
  • 99bigBed narrowPeak
  • 98tsv
  • 39bed broadPeak
  • 39tagAlign
  • 32bed bed3+
  • 30bigBed broadPeak
  • 19zippedFastqFolder
  • 8bed bedMethyl
  • 8bigBed bedMethyl
Organism
  • 574Homo sapiens
Biosample type
  • 279primary cell
  • 118tissue
  • 106in vitro differentiated cells
  • 74cell line
  • 4stem cell
Organ
  • 248pancreas
  • 177epithelium
  • 108liver
  • 40connective tissue
  • 24embryo
  • 17brain
  • 7spleen
  • 6adipose tissue
  • 5blood
  • 5bodily fluid
  • 4vasculature
  • 2blood vessel
  • 2musculature of body
Project
  • 470AMP
  • 111HPAP
Genome assembly (visualization)
  • 355hg19
  • 334GRCh38
  • 5hg18
Lab
  • 470AMP-T2D consortium
  • 111Klaus Kaestner, Upenn
Audit category:
  • 11inconsistent ontology term
Audit category:
  • 54missing controlled_by
Audit category:
  • 31inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
target.investigated_as!
  • transcription factor
BIOSAMPLE
ASSAY

581 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
WGBS
GRO-seq
RRBS
DNase-seq
FAIRE-seq
ATAC-seq
primary cell
pancreatic alpha cell134210
exocrine cell39
pancreatic beta cell131110
pancreatic endocrine cell23
pancreatic ductal cell137
tissue
islet of Langerhans21611
liver1811
body of pancreas19
pancreas1521
brain91
in vitro differentiated cells
adipocyte31
pancreatic endoderm1541
hepatocyte13
definitive endodermal cell621
primitive gut cell621
cell line
HepG269
GM128785
stem cell
hESC31
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