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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 115ChIP-seq
Assay category
  • 115DNA binding
Target of assay
  • 345transcription factor
  • 222histone
  • 222histone modification
  • 127control
  • 115broad histone mark
  • 106narrow histone mark
  • 82recombinant protein
  • 68RNA binding protein
  • 25chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 46August, 2017
  • 17September, 2018
  • 15December, 2017
  • 11October, 2018
  • 8February, 2018
  • 8November, 2017
  • 6October, 2017
  • 4January, 2019
Available data
  • 115fastq
  • 114bam
  • 114bigWig
  • 108bed narrowPeak
  • 55bigBed narrowPeak
  • 22tagAlign
  • 20bed broadPeak
  • 14bigBed broadPeak
  • 11bed bed3+
Organism
  • 111Homo sapiens
Biosample type
  • 42tissue
  • 33primary cell
  • 31in vitro differentiated cells
  • 8cell line
  • 1stem cell
Organ
  • 52pancreas
  • 23epithelium
  • 22liver
  • 12connective tissue
  • 6brain
  • 4embryo
  • 4spleen
Project
  • 115AMP
Genome assembly (visualization)
  • 114hg19
  • 113GRCh38
Lab
  • 115AMP-T2D consortium
Audit category:
  • 25missing controlled_by
Audit category:
  • 15inconsistent control read length
  • 2inconsistent assembly
BIOSAMPLE
ASSAY

115 results

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Clear Filters
ChIP-seq
tissue
body of pancreas11
pancreas8
brain6
islet of Langerhans6
liver4
primary cell
pancreatic endocrine cell11
pancreatic ductal cell6
skeletal muscle myoblast6
pancreatic acinar cell4
pancreatic alpha cell3
in vitro differentiated cells
adipocyte12
hepatocyte7
pancreatic endoderm4
definitive endodermal cell2
primitive gut cell2
cell line
HepG28
stem cell
hESC1
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