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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 222ChIP-seq
Assay category
  • 222DNA binding
Target of assay
  • 345transcription factor
  • 222histone
  • 222histone modification
  • 127control
  • 115broad histone mark
  • 106narrow histone mark
  • 82recombinant protein
  • 68RNA binding protein
  • 25chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 95August, 2017
  • 32September, 2018
  • 31December, 2017
  • 18November, 2017
  • 16February, 2018
  • 16October, 2018
  • 7January, 2019
  • 7October, 2017
Available data
  • 222fastq
  • 221bam
  • 220bigWig
  • 203bed narrowPeak
  • 92bigBed narrowPeak
  • 37bed broadPeak
  • 35tagAlign
  • 28bigBed broadPeak
  • 22bed bed3+
Organism
  • 216Homo sapiens
Biosample type
  • 73primary cell
  • 66tissue
  • 65in vitro differentiated cells
  • 16cell line
  • 2stem cell
Organ
  • 100pancreas
  • 51epithelium
  • 37liver
  • 26connective tissue
  • 12embryo
  • 10brain
  • 6spleen
  • 2vasculature
  • 1adipose tissue
  • 1blood
  • 1blood vessel
  • 1bodily fluid
Project
  • 222AMP
Genome assembly (visualization)
  • 220hg19
  • 218GRCh38
Lab
  • 222AMP-T2D consortium
Audit category:
  • 2inconsistent ontology term
Audit category:
  • 54missing controlled_by
Audit category:
  • 31inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
BIOSAMPLE
ASSAY

222 results

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Clear Filters
ChIP-seq
primary cell
pancreatic endocrine cell23
pancreatic ductal cell13
skeletal muscle myoblast12
pancreatic acinar cell8
pancreatic alpha cell7
tissue
body of pancreas16
islet of Langerhans14
pancreas12
brain7
spleen6
in vitro differentiated cells
adipocyte25
hepatocyte12
pancreatic endoderm10
definitive endodermal cell4
primitive gut cell4
cell line
HepG215
GM128781
stem cell
hESC2
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