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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 106ChIP-seq
Assay category
  • 106DNA binding
Target of assay
  • 345transcription factor
  • 222histone
  • 222histone modification
  • 127control
  • 115broad histone mark
  • 106narrow histone mark
  • 82recombinant protein
  • 68RNA binding protein
  • 25chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 48August, 2017
  • 16December, 2017
  • 15September, 2018
  • 10November, 2017
  • 8February, 2018
  • 5October, 2018
  • 3January, 2019
  • 1October, 2017
Available data
  • 106bam
  • 106fastq
  • 105bigWig
  • 94bed narrowPeak
  • 37bigBed narrowPeak
  • 17bed broadPeak
  • 14bigBed broadPeak
  • 13tagAlign
  • 11bed bed3+
Organism
  • 104Homo sapiens
Biosample type
  • 40primary cell
  • 33in vitro differentiated cells
  • 24tissue
  • 8cell line
  • 1stem cell
Organ
  • 48pancreas
  • 28epithelium
  • 15liver
  • 13connective tissue
  • 8embryo
  • 4brain
  • 2spleen
  • 2vasculature
  • 1adipose tissue
  • 1blood
  • 1blood vessel
  • 1bodily fluid
Project
  • 106AMP
Genome assembly (visualization)
  • 105hg19
  • 104GRCh38
Lab
  • 106AMP-T2D consortium
Audit category:
  • 2inconsistent ontology term
Audit category:
  • 29missing controlled_by
Audit category:
  • 16inconsistent control read length
  • 1inconsistent assembly
  • 1inconsistent control run_type
BIOSAMPLE
ASSAY

106 results

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Clear Filters
ChIP-seq
primary cell
pancreatic endocrine cell12
pancreatic ductal cell7
skeletal muscle myoblast6
pancreatic acinar cell4
pancreatic alpha cell4
in vitro differentiated cells
adipocyte12
pancreatic endoderm6
hepatocyte5
Hepatic endoderm2
definitive endodermal cell2
tissue
islet of Langerhans8
body of pancreas5
pancreas4
right lobe of liver2
spleen2
cell line
HepG27
GM128781
stem cell
hESC1
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