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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
ATAC-seq
66
total RNA-seq
47
WGBS
10
MeRIP-seq
10
snATAC-seq
5
Hi-C
2
Capture-C
1
pCHi-C
Assay category
94
DNA accessibility
66
Transcription
47
DNA methylation
5
3D chromatin structure
Target of assay
5
control
5
nucleotide modification
Date released
104
May, 2022
55
February, 2023
19
September, 2020
10
November, 2020
8
January, 2021
7
August, 2020
6
August, 2021
6
February, 2021
5
March, 2019
3
October, 2022
2
May, 2021
Available data
94
fastq
80
zippedFastqFolder
25
bam
20
bed narrowPeak
12
bigWig
7
tsv
6
txt
4
bedpe bed3+
4
hic
3
cool
2
bed bed3+
1
bed broadPeak
1
bedpe
Organism
225
Homo sapiens
Biosample type
153
primary cell
62
tissue
6
cell line
4
in vitro differentiated cells
Organ
220
pancreas
191
kidney
158
epithelium
70
liver
35
heart
19
lung
8
blood
8
bodily fluid
5
connective tissue
1
bone element
1
bone marrow
1
thymus
Project
152
HPAP
46
AMP
27
T1D
Genome assembly (visualization)
28
hg19
12
GRCh38
Lab
AMP-T2D consortium
152
Klaus Kaestner, Upenn
52
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Stephen Parker, UMich
Audit category:
6
inconsistent ontology term
3
audit script error
lab.title!
AMP-T2D consortium
Stephen Parker, UMich
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
225 results
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ATAC-seq
total RNA-seq
WGBS
MeRIP-seq
snATAC-seq
Hi-C
Capture-C
pCHi-C
primary cell
pancreatic alpha cell
29
42
31
1
pancreatic beta cell
16
11
16
1
pancreatic acinar cell
4
1
adult endothelial progenitor cell
1
tissue
islet of Langerhans
33
12
4
6
2
pancreas
1
4
cell line
EndoC_BH1
6
in vitro differentiated cells
adipocyte
1
1
osteoblast
1
1
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