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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
ATAC-seq
41
WGBS
33
single cell RNA-seq
26
total RNA-seq
21
snATAC-seq
3
Hi-C
Assay category
105
DNA accessibility
59
Transcription
41
DNA methylation
3
3D chromatin structure
Date released
235
May, 2021
198
May, 2022
168
August, 2021
102
February, 2023
59
September, 2020
47
September, 2023
45
February, 2021
45
May, 2020
40
May, 2024
19
April, 2020
16
January, 2021
14
May, 2023
10
November, 2020
7
August, 2020
5
March, 2019
5
March, 2023
3
October, 2022
1
October, 2017
0
December, 2018
Available data
134
zippedFastqFolder
38
bed narrowPeak
31
fastq
27
bigWig
24
bam
6
txt
3
bedpe bed3+
3
cool
3
hic
Organism
208
Homo sapiens
Biosample type
144
primary cell
64
tissue
Organ
114
pancreas
90
epithelium
40
liver
Project
144
HPAP
64
AMP
Genome assembly (visualization)
41
hg19
7
GRCh38
Lab
144
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
AMP-T2D consortium
24
Kyle Gaulton, UCSD
Audit category:
3
audit script error
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
208 results
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ATAC-seq
WGBS
single cell RNA-seq
total RNA-seq
snATAC-seq
Hi-C
primary cell
Langerhans cell
33
21
pancreatic alpha cell
27
25
1
pancreatic beta cell
15
16
1
pancreatic acinar cell
4
1
tissue
liver
20
20
islet of Langerhans
18
6
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