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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ATAC-seq
58
total RNA-seq
18
ChIP-seq
8
single cell RNA-seq
6
snATAC-seq
5
STARR-seq
2
Capture-C
2
Hi-C
1
whole genome sequencing assay
Assay category
72
DNA accessibility
66
Transcription
18
DNA binding
2
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
234
May, 2021
166
August, 2021
94
May, 2022
47
February, 2023
47
September, 2023
45
May, 2020
40
May, 2024
40
September, 2020
39
February, 2021
19
April, 2020
14
May, 2023
5
March, 2023
Available data
80
bed narrowPeak
64
xls
57
txt
16
bigWig
9
tsv
2
bed bed3+
2
hic
1
bedpe bed3+
1
vcf
Organism
166
Homo sapiens
Biosample type
128
tissue
34
cell line
4
in vitro differentiated cells
Organ
130
kidney
31
liver
4
connective tissue
pancreas
Project
166
AMP
Genome assembly (visualization)
64
GRCh38
20
hg19
Lab
AMP-T2D consortium
128
Katalin Susztak, Upenn
34
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
lab.title!
AMP-T2D consortium
month_released!
August, 2017
organ_slims!
bodily fluid
pancreas
BIOSAMPLE
ASSAY
166 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
whole genome sequencing assay
tissue
kidney
64
49
8
6
1
cell line
HepG2
9
18
2
1
1
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
adipocyte
1
1
osteoblast
1
1
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