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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ATAC-seq
59
total RNA-seq
18
ChIP-seq
8
single cell RNA-seq
7
Hi-C
6
snATAC-seq
5
STARR-seq
2
Capture-C
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
72
DNA accessibility
71
Transcription
18
DNA binding
7
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
235
May, 2021
198
May, 2022
168
August, 2021
102
February, 2023
59
September, 2020
47
September, 2023
45
February, 2021
45
May, 2020
40
May, 2024
19
April, 2020
16
January, 2021
14
May, 2023
10
November, 2020
7
August, 2020
5
March, 2019
5
March, 2023
3
October, 2022
1
October, 2017
Available data
80
bed narrowPeak
64
xls
57
txt
16
bigWig
10
tsv
6
hic
5
bedpe bed3+
3
cool
2
bed bed3+
1
vcf
Organism
172
Homo sapiens
Biosample type
130
tissue
36
cell line
4
in vitro differentiated cells
4
primary cell
2
stem cell
Organ
130
kidney
31
liver
5
pancreas
4
connective tissue
3
epithelium
Project
168
AMP
4
community
3
HPAP
1
ITG
Genome assembly (visualization)
65
GRCh38
23
hg19
Lab
AMP-T2D consortium
128
Katalin Susztak, Upenn
36
Bing Ren, UCSD
4
Anna Gloyn, Oxford
4
Struan F.A. Grant, CHOP
3
Klaus Kaestner, Upenn
1
ITG
Audit category:
3
audit script error
1
inconsistent ontology term
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
176 results
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ATAC-seq
total RNA-seq
ChIP-seq
single cell RNA-seq
Hi-C
snATAC-seq
STARR-seq
Capture-C
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
tissue
kidney
64
49
8
1
6
islet of Langerhans
1
1
cell line
HepG2
9
18
1
2
1
EndoC-BH1
1
1
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
adipocyte
1
1
osteoblast
1
1
primary cell
chondrocytes
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
stem cell
SB Ad3.1
1
1
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