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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
total RNA-seq
3
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
39
Transcription
3
DNA accessibility
Date released
226
May, 2021
162
August, 2021
94
May, 2022
47
February, 2023
47
September, 2023
45
May, 2020
40
May, 2024
40
September, 2020
39
February, 2021
19
April, 2020
14
May, 2023
8
January, 2021
5
March, 2023
0
November, 2020
Available data
39
fastq
3
bed bedgraph
3
bigWig
3
txt
2
bed narrowPeak
Organism
47
Homo sapiens
Biosample type
39
primary cell
5
cell line
3
in vitro differentiated cells
Organ
pancreas
40
epithelium
Project
39
HPAP
5
T1D
3
AMP
Genome assembly (visualization)
3
hg19
Lab
AMP-T2D consortium
39
Klaus Kaestner, Upenn
5
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
lab.title!
AMP-T2D consortium
organ_slims!
pancreas
target.investigated_as!
control
BIOSAMPLE
ASSAY
47 results
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total RNA-seq
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
exocrine cell
39
cell line
EndoC_BH1
3
2
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
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