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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
single cell RNA-seq
42
ChIP-seq
25
total RNA-seq
12
ATAC-seq
5
STARR-seq
4
Capture-C
2
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
123
Transcription
42
DNA binding
12
DNA accessibility
2
3D chromatin structure
1
DNA sequencing
Target of assay
20
histone
20
histone modification
12
control
11
narrow histone mark
11
transcription factor
9
broad histone mark
RNA binding protein
Date released
715
February, 2021
403
August, 2017
394
May, 2021
369
November, 2017
341
May, 2020
314
October, 2019
214
June, 2019
205
February, 2023
200
May, 2022
190
August, 2021
168
July, 2018
115
May, 2019
July, 2019
90
December, 2017
76
April, 2019
73
September, 2018
67
November, 2018
65
October, 2018
64
March, 2020
60
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
May, 2024
33
December, 2018
25
February, 2020
24
January, 2019
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
1
March, 2023
1
May, 2023
Available data
123
tsv
49
bam
46
bigWig
41
bed narrowPeak
24
tagAlign
5
bed bed3+
2
bedpe bed3+
1
hic
1
vcf
Organism
189
Homo sapiens
Biosample type
101
tissue
43
cell line
42
in vitro differentiated cells
4
primary cell
Organ
92
heart
34
liver
8
embryo
6
blood vessel
6
epithelium
6
vasculature
5
connective tissue
4
pancreas
2
artery
2
kidney
1
adipose tissue
Project
190
AMP
Genome assembly (visualization)
58
hg19
41
GRCh38
Lab
151
AMP-T2D consortium
Katalin Susztak, Upenn
35
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
lab.title!
Anna Gloyn, Oxford
Katalin Susztak, Upenn
month_released!
July, 2019
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
190 results
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single cell RNA-seq
ChIP-seq
total RNA-seq
ATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
aorta
4
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cell line
HepG2
17
9
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
21
7
10
adipocyte
1
1
osteoblast
1
1
primary cell
hepatocyte
4
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