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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
400
ChIP-seq
189
total RNA-seq
23
ATAC-seq
4
Hi-C
4
WGBS
3
DNase-seq
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
400
DNA binding
193
Transcription
26
DNA accessibility
6
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
289
transcription factor
108
control
histone modification
102
histone
66
recombinant protein
60
narrow histone mark
42
broad histone mark
39
RNA binding protein
18
chromatin remodeller
2
other context
2
other post-translational modification
Date released
300
November, 2017
167
May, 2020
November, 2018
46
December, 2017
40
May, 2022
29
August, 2021
21
August, 2017
10
July, 2019
5
December, 2019
5
January, 2019
3
February, 2021
3
March, 2020
2
June, 2019
2
October, 2019
1
December, 2018
1
February, 2020
Available data
548
bam
487
bigWig
367
fastq
309
bed narrowPeak
272
bigBed narrowPeak
174
tsv
46
bed broadPeak
46
bigBed broadPeak
28
tagAlign
7
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
635
Homo sapiens
Biosample type
337
cell line
284
tissue
11
primary cell
3
in vitro differentiated cells
Organ
743
pancreas
635
liver
604
connective tissue
457
adipose tissue
425
epithelium
324
kidney
296
heart
165
vasculature
160
blood vessel
159
bone element
121
artery
97
brain
73
limb
63
musculature of body
58
eye
53
blood
53
bodily fluid
25
embryo
20
lung
19
nerve
18
ureter
16
skeleton
10
spleen
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
635
AMP
Genome assembly (visualization)
493
hg19
409
GRCh38
Lab
567
AMP-T2D consortium
40
Karen Mohlke, UNC
28
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
9
missing controlled_by
Audit category:
10
inconsistent control read length
4
inconsistent control run_type
lab.title!
Anna Gloyn, Oxford
month_released!
November, 2018
November, 2019
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
635 results
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ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
WGBS
DNase-seq
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
315
14
1
2
2
2
1
tissue
liver
76
167
20
1
3
1
1
1
1
right lobe of liver
5
3
1
1
1
2
primary cell
hepatocyte
1
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
in vitro differentiated cells
hepatocyte
3
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