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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
76
ATAC-seq
73
total RNA-seq
34
ChIP-seq
6
snATAC-seq
5
STARR-seq
2
Capture-C
2
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
179
Transcription
82
DNA accessibility
34
DNA binding
2
3D chromatin structure
1
DNA sequencing
Target of assay
20
histone
20
histone modification
12
control
11
narrow histone mark
11
transcription factor
broad histone mark
1
RNA binding protein
Date released
683
February, 2021
356
November, 2017
341
May, 2020
306
August, 2021
262
May, 2021
245
October, 2019
206
June, 2019
149
February, 2023
146
August, 2017
102
July, 2019
96
May, 2022
81
November, 2018
79
December, 2017
60
May, 2019
March, 2020
47
September, 2023
43
April, 2019
40
September, 2020
35
December, 2018
31
February, 2018
26
January, 2019
24
February, 2020
23
October, 2018
20
May, 2024
19
April, 2020
15
May, 2023
11
July, 2018
10
April, 2018
10
December, 2019
8
January, 2018
8
January, 2021
8
October, 2017
6
November, 2019
6
November, 2020
2
June, 2018
1
August, 2018
1
March, 2023
1
October, 2022
1
September, 2018
Available data
122
tsv
98
bed narrowPeak
64
xls
57
txt
42
bam
39
bigWig
17
tagAlign
4
bed bed3+
2
hic
1
bedpe bed3+
1
vcf
Organism
305
Homo sapiens
Biosample type
227
tissue
41
cell line
35
in vitro differentiated cells
3
primary cell
Organ
130
kidney
92
heart
33
liver
8
embryo
6
blood vessel
6
vasculature
5
connective tissue
5
epithelium
pancreas
2
artery
1
adipose tissue
Project
306
AMP
Genome assembly (visualization)
98
GRCh38
53
hg19
Lab
141
AMP-T2D consortium
128
Katalin Susztak, Upenn
33
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
lab.title!
Anna Gloyn, Oxford
month_released!
March, 2020
organ_slims!
pancreas
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
306 results
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single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
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cell line
HepG2
9
17
2
1
1
H1-hESC
8
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
10
7
14
adipocyte
1
1
osteoblast
1
1
primary cell
hepatocyte
3
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