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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
single cell RNA-seq
25
ChIP-seq
15
total RNA-seq
12
ATAC-seq
4
Capture-C
1
RNA microarray
Assay category
113
Transcription
25
DNA binding
12
DNA accessibility
Target of assay
17
histone
17
histone modification
9
narrow histone mark
8
broad histone mark
8
control
Date released
715
February, 2021
403
August, 2017
394
May, 2021
369
November, 2017
341
May, 2020
272
October, 2019
214
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
155
August, 2021
115
May, 2019
108
July, 2019
90
December, 2017
76
April, 2019
73
September, 2018
67
November, 2018
65
October, 2018
64
March, 2020
60
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
May, 2024
33
December, 2018
24
February, 2020
24
January, 2019
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
3
March, 2019
1
August, 2022
1
May, 2023
Available data
113
tsv
49
bam
33
bigWig
28
bed narrowPeak
24
tagAlign
5
bed bed3+
Organism
154
Homo sapiens
Biosample type
99
tissue
42
in vitro differentiated cells
10
cell line
4
primary cell
Organ
92
heart
8
embryo
6
blood vessel
6
epithelium
6
vasculature
5
connective tissue
4
liver
2
artery
2
pancreas
1
adipose tissue
Project
155
AMP
Genome assembly (visualization)
44
hg19
41
GRCh38
Lab
151
AMP-T2D consortium
Katalin Susztak, Upenn
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
lab.title!
Bing Ren, UCSD
Katalin Susztak, Upenn
organ_slims!
nerve
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
155 results
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Clear Filters
single cell RNA-seq
ChIP-seq
total RNA-seq
ATAC-seq
Capture-C
RNA microarray
tissue
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
aorta
4
+ See 9 more…
in vitro differentiated cells
neural progenitor cell
21
7
10
adipocyte
1
1
osteoblast
1
1
cell line
H1-hESC
8
EndoC_BH1
2
primary cell
hepatocyte
4
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